Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_F14
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    41   2e-04
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    31   0.15 
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    26   5.5  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    26   5.5  

>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +1

Query: 451 IKQIQLEQDSGKSLHDAXLKXSLXDLNRAGAPLIXVVFEPXLQD 582
           I+ IQLEQD+ KS         L D NRAG PL+ +V +P   D
Sbjct: 124 IQHIQLEQDTAKSTSAKNPSRILLDYNRAGTPLLEIVTKPCFHD 167


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +1

Query: 352 DRSSNLHFVLPTFKF*SVFTPGFHKKPYXKSSKIKQIQLEQDS 480
           D S +  + LP+F F  + TP FH++      KIK++QL  D+
Sbjct: 205 DLSISSLYTLPSF-FPQLPTPSFHRRSINLCPKIKKLQLSHDT 246


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 329 IFYINLLKTVPQTYTSFFLHSNFNRYSHQDFTKSLT 436
           IF I        +YT+   H N++ YS   FT SLT
Sbjct: 3   IFPIVKYSVAEDSYTTDSSHINWSHYSDGGFTLSLT 38


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1201

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 338  INLLKTVPQTYTSFFLHSNFNRYSHQDFTKS 430
            +N+ KT+ +    F  H+NFN+    DF  S
Sbjct: 1136 VNIQKTLAKCAEEFAEHTNFNKVELLDFVYS 1166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,199,054
Number of Sequences: 5004
Number of extensions: 37953
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)