Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_F14
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0023 - 19325966-19326046,19326132-19326248,19326635-193267...    49   3e-06
04_04_1359 - 32886181-32886789                                         32   0.46 
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568...    28   5.6  

>11_06_0023 -
           19325966-19326046,19326132-19326248,19326635-19326703,
           19326922-19327119,19327388-19327591,19327688-19327828,
           19328416-19328625,19329330-19329944
          Length = 544

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 23/67 (34%), Positives = 35/67 (52%)
 Frame = +1

Query: 451 IKQIQLEQDSGKSLHDAXLKXSLXDLNRAGAPLIXVVFEPXLQDGXXXXXXXXXXXXIVQ 630
           + ++ +E+D+GK LH      S  DLNRAG PL+ +V EP ++ G            +V+
Sbjct: 183 VTRVHMEEDAGKLLHSESGSYSQVDLNRAGVPLLEIVSEPDMRTGIEAAEYGAELQRLVR 242

Query: 631 RLGACTG 651
            LG   G
Sbjct: 243 YLGVSNG 249


>04_04_1359 - 32886181-32886789
          Length = 202

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -2

Query: 644 HAPRRCTINTNSLTKAAAXSPSCKXGSNTTXMSGAPALFRSXKLXLSXA 498
           HAPR   ++++S   AA  +  C   +NTT +   PA FR+    L+ A
Sbjct: 6   HAPRSVVVSSSS-PAAAIATAGCVVDTNTTFVQADPATFRALVQKLTGA 53


>01_06_1801 -
           39954425-39954533,39955289-39955578,39955786-39956838,
           39956998-39957263,39957345-39957420,39957525-39957605,
           39957676-39957831,39958565-39958669,39958761-39959367,
           39959514-39959585,39959802-39959953,39960063-39960240,
           39960642-39960745,39960822-39960953,39961036-39961132,
           39961280-39961407,39961533-39961592,39962799-39962918,
           39963011-39963091,39963173-39963361,39963826-39964024,
           39964177-39964257,39964398-39964588,39965226-39965382,
           39965986-39966119,39966266-39966334,39966434-39966481,
           39966572-39966646,39967112-39967192,39967399-39967461,
           39967564-39967623,39967754-39967795,39968777-39968902,
           39969027-39969176
          Length = 1843

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +1

Query: 364 NLHFVLPTFKF*SVFTPGFHKKPYXKSSKIKQIQLEQDSGKSLHDAXLKXSLXDLNRA 537
           N+HFVL  F F  +F    H +    +S I +I L   +GK L D   +    DL  A
Sbjct: 310 NIHFVLLKFMFLEIFAISRHCERELYASNIGKINLAA-TGKDLMDDEKQEITIDLYTA 366


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,964,407
Number of Sequences: 37544
Number of extensions: 204814
Number of successful extensions: 325
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)