Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_F14
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.0  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   6.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.0  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    21   7.9  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 366 PTLRSSYIQILIGIHTRIS 422
           P     Y+Q++  +HTRIS
Sbjct: 316 PLHMQKYVQMIHDLHTRIS 334


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/16 (37%), Positives = 14/16 (87%)
 Frame = +1

Query: 196 LITKILKKSKCDISLI 243
           L+ ++++ +KCD+SL+
Sbjct: 402 LVDELVRGTKCDVSLL 417


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 366 PTLRSSYIQILIGIHTRIS 422
           P     Y+Q++  +HTRIS
Sbjct: 316 PLHMQKYVQMIHDLHTRIS 334


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = -2

Query: 164 MRRGKGRQKPM*PLQVEYIFNGSFKLKRFQYIVMKFRVGIS 42
           +R+ K  +KP  P   + + +   K +  QY+ +  R   S
Sbjct: 3   LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLTIAERAEFS 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,625
Number of Sequences: 438
Number of extensions: 2757
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)