Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_F13
         (432 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   2.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   2.2  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   2.2  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   2.9  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   3.8  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   3.8  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   6.6  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    20   8.8  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
 Frame = +1

Query: 37  NNVH-----TVVPHLSKRKPTTXSIFA 102
           NN+H      + PHL++  PTT +  A
Sbjct: 234 NNIHGMAPSVMYPHLNRSSPTTATAIA 260


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
 Frame = +1

Query: 37  NNVH-----TVVPHLSKRKPTTXSIFA 102
           NN+H      + PHL++  PTT +  A
Sbjct: 182 NNIHGMAPSVMYPHLNRSSPTTATAIA 208


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
 Frame = +1

Query: 37  NNVH-----TVVPHLSKRKPTTXSIFA 102
           NN+H      + PHL++  PTT +  A
Sbjct: 365 NNIHGMAPSVMYPHLNRSSPTTATAIA 391


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 72  EETHNLXYFCRI 107
           E+ +N+ YFCRI
Sbjct: 327 EKYYNILYFCRI 338


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 155 VHFHCSMEMTKYDIKNYLXKIYE 223
           +HFH S   +K + K  L K  E
Sbjct: 414 LHFHASWLKSKKEFKEELIKFIE 436


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 155 VHFHCSMEMTKYDIKNYLXKIYE 223
           +HFH S   +K + K  L K  E
Sbjct: 421 LHFHASWLKSKKEFKEELIKFIE 443


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 42  CPHGGTPFIKEETHNLXYFCR 104
           CP    PFI E  H+L Y  R
Sbjct: 233 CPK--CPFITEYKHHLEYHLR 251


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 137 KQLPNIVHFHCSMEMTKYDIKN 202
           ++ PNI H  CS + T   + N
Sbjct: 9   RESPNIDHNSCSSDDTVLSVGN 30


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,552
Number of Sequences: 336
Number of extensions: 1636
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9565283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)