Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_F13
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|...    38   9e-04
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    29   0.31 
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    26   2.8  
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    25   5.0  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    25   6.6  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   6.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    24   8.7  

>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 161

 Score = 37.5 bits (83), Expect = 9e-04
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +2

Query: 92  VFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLXKIYEXPVVDVRTKINMG 262
           V+ PN    L R    Q P    F   + + K+D+++YL  +Y   VV V+++I  G
Sbjct: 10  VYFPNITFTLCRGLNLQ-PKFAVFRVPLHVNKFDVRDYLQHVYNLKVVSVKSRIYQG 65


>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 29.1 bits (62), Expect = 0.31
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 149 NIVHFHCSMEMTKYDIKNYLXKIYEXPVVDVRTKI 253
           N + FH  ++  K+ IKN + K+Y    V + T I
Sbjct: 79  NTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLI 113


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 149 NIVHFHCSMEMTKYDIKNYLXKIYEXPVVDVRTKI 253
           N + FH  ++  K+ IK  + K+Y    V + T I
Sbjct: 79  NTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLI 113


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 357 IHTYLTKVLMTNXNMPNHYMNQ 422
           IH YL+KVL    N  + Y NQ
Sbjct: 123 IHEYLSKVLYARRNKLDPYWNQ 144


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 348 HLSIHTYLTKVLMTNXNMPNHYMNQQQF 431
           HLS H YL K+   N N+ N Y + Q F
Sbjct: 171 HLSFHAYLRKI---NSNV-NKYASSQSF 194


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 101 PNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLXKIY 220
           P+  + LV  +P+ +PN+      +++ +YDI   L   Y
Sbjct: 605 PSSKVNLVDTYPQTIPNVSKPSTPIDVPEYDISACLPGFY 644


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 174 WK*LNMTLKIIXKKFMXYPLW 236
           WK L++ L++I    + YPLW
Sbjct: 285 WKRLDLRLQLIQCLAISYPLW 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,532,365
Number of Sequences: 5004
Number of extensions: 25033
Number of successful extensions: 58
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)