Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_F13
         (432 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49254-1|CAA89220.1|  153|Homo sapiens L23-related gene protein.       93   5e-19
U26596-1|AAC50415.1|  153|Homo sapiens ribosomal protein L23-rel...    93   5e-19
BC027710-1|AAH27710.1|  153|Homo sapiens mitochondrial ribosomal...    93   5e-19

>Z49254-1|CAA89220.1|  153|Homo sapiens L23-related gene protein.
          Length = 153

 Score = 92.7 bits (220), Expect = 5e-19
 Identities = 49/121 (40%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
 Frame = +2

Query: 56  YPIYQRGNPQLXVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLXKIYEXPVV 235
           YP+Y+ G PQL VF  NF+++LVRP   Q  + V F   MEMT+ D++NYL  IY  PV 
Sbjct: 7   YPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVA 66

Query: 236 DVRTKINMGXXXXXXXXXXXXXXXDVKVAFVTLPNTMTFKYPHLF-DKSINDEXEHAKSL 412
            VRT++  G               D KVA+V L +  TF +P LF +K  + E   A  L
Sbjct: 67  AVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEGSAADDL 126

Query: 413 H 415
           +
Sbjct: 127 Y 127


>U26596-1|AAC50415.1|  153|Homo sapiens ribosomal protein
           L23-related product protein.
          Length = 153

 Score = 92.7 bits (220), Expect = 5e-19
 Identities = 49/121 (40%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
 Frame = +2

Query: 56  YPIYQRGNPQLXVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLXKIYEXPVV 235
           YP+Y+ G PQL VF  NF+++LVRP   Q  + V F   MEMT+ D++NYL  IY  PV 
Sbjct: 7   YPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVA 66

Query: 236 DVRTKINMGXXXXXXXXXXXXXXXDVKVAFVTLPNTMTFKYPHLF-DKSINDEXEHAKSL 412
            VRT++  G               D KVA+V L +  TF +P LF +K  + E   A  L
Sbjct: 67  AVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEGSAADDL 126

Query: 413 H 415
           +
Sbjct: 127 Y 127


>BC027710-1|AAH27710.1|  153|Homo sapiens mitochondrial ribosomal
           protein L23 protein.
          Length = 153

 Score = 92.7 bits (220), Expect = 5e-19
 Identities = 49/121 (40%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
 Frame = +2

Query: 56  YPIYQRGNPQLXVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLXKIYEXPVV 235
           YP+Y+ G PQL VF  NF+++LVRP   Q  + V F   MEMT+ D++NYL  IY  PV 
Sbjct: 7   YPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVA 66

Query: 236 DVRTKINMGXXXXXXXXXXXXXXXDVKVAFVTLPNTMTFKYPHLF-DKSINDEXEHAKSL 412
            VRT++  G               D KVA+V L +  TF +P LF +K  + E   A  L
Sbjct: 67  AVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEGSAADDL 126

Query: 413 H 415
           +
Sbjct: 127 Y 127


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,923,909
Number of Sequences: 237096
Number of extensions: 907061
Number of successful extensions: 4915
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4915
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3430805640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)