Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_F13
         (432 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-4|AAG00016.1|  159|Caenorhabditis elegans Hypothetical ...    80   8e-16
U88169-2|AAB42234.1|  342|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical p...    27   4.4  

>AF000263-4|AAG00016.1|  159|Caenorhabditis elegans Hypothetical
           protein T08B2.8 protein.
          Length = 159

 Score = 79.8 bits (188), Expect = 8e-16
 Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 9/135 (6%)
 Frame = +2

Query: 41  MSTRWYPIYQRGNPQLXVFLPNFWMKLVRPHP---KQLP-NIVHFHCSMEMTKYDIKNYL 208
           M++R   ++Q GNPQ  VFLP+FWM +V        +LP N V F     M+++DI+ YL
Sbjct: 1   MTSRLARLWQPGNPQRRVFLPDFWMAVVESPSVGRNRLPRNCVKFEVDPRMSRHDIREYL 60

Query: 209 XKIYEXPVVDVRTKINMG-----XXXXXXXXXXXXXXXDVKVAFVTLPNTMTFKYPHLFD 373
            KIY+ PV DVRT++ MG                    D K+A+V +     F YP +F+
Sbjct: 61  TKIYDLPVRDVRTEVQMGDITWNSKLDHQYKKAMWKDEDKKIAYVFMSKGFEFSYPQMFE 120

Query: 374 KSINDEXEHAKSLHE 418
            ++ ++ E  K++ +
Sbjct: 121 -ALEEDLELVKAMKQ 134


>U88169-2|AAB42234.1|  342|Caenorhabditis elegans Hypothetical
           protein T03F1.6a protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 146 PNIVHFHCSMEMTKYDIKNYLXKIYEXPVVDVR 244
           PN+ HFHCS+   + D+      +   PV   R
Sbjct: 290 PNLQHFHCSLPHDEIDLSQEFLALLNEPVRKTR 322


>Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical
           protein F40F9.2 protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 351 NVIVFGNVTKATLTSXXLIT*PLTTXFLNFPIFILVLT 238
           +VI+F   TK+ LTS   I   L+    +F IF L+ T
Sbjct: 137 SVIIFSMKTKSDLTSKMGIAFMLSMVLFSFGIFALIFT 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,533,019
Number of Sequences: 27780
Number of extensions: 146786
Number of successful extensions: 313
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)