Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_F13
         (432 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   2.6  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   2.6  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   2.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   7.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   7.8  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 153 MLGSCFGCG 127
           MLGS FGCG
Sbjct: 130 MLGSLFGCG 138


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 153 MLGSCFGCG 127
           MLGS FGCG
Sbjct: 96  MLGSLFGCG 104


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 153 MLGSCFGCG 127
           MLGS FGCG
Sbjct: 6   MLGSLFGCG 14


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 109 KIRQKYXKLWVSSLINGVP 53
           K+++     WVS + NGVP
Sbjct: 487 KMQKVLIDFWVSFVNNGVP 505


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 109 KIRQKYXKLWVSSLINGVP 53
           K+++     WVS + NGVP
Sbjct: 487 KMQKVLIDFWVSFVNNGVP 505


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,118
Number of Sequences: 438
Number of extensions: 1725
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)