Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_F13
         (432 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52750.1 68416.m05812 chloroplast division protein, putative ...    27   4.1  
At1g74150.1 68414.m08588 kelch repeat-containing protein low sim...    26   9.6  

>At3g52750.1 68416.m05812 chloroplast division protein, putative
           strong similarity to plastid division protein FtsZ
           [Arabidopsis thaliana] GI:14195704, chloroplast division
           protein AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809
          Length = 473

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 31  NFNNVHTVVPHLSKRKPTTXSIFAEFLDEISTTTSKTTA 147
           +F N+H  +  L+ RK T+     E LDE+ST  +   A
Sbjct: 77  SFLNLHPEISMLNPRKETSSVPITEDLDELSTPNTYNEA 115


>At1g74150.1 68414.m08588 kelch repeat-containing protein low
           similarity to rngB protein, Dictyostelium discoideum,
           PIR:S68824; contains Pfam profile PF01344: Kelch motif
          Length = 552

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 88  KLWVSSLINGVPPC 47
           ++W+   INGVPPC
Sbjct: 60  QIWIRPEINGVPPC 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,809,821
Number of Sequences: 28952
Number of extensions: 127155
Number of successful extensions: 232
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)