Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_F12
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom...    28   1.0  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    26   5.4  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    26   5.4  
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    25   9.5  

>SPBC776.07 |||mitochondrial Mam33 family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 429 EGVDT-NWYFAKSVNVMTSDGVSVQCRTYQQTINPPLRK 542
           +G D  N YF+K ++++TSD +  + +  +Q + P  ++
Sbjct: 181 DGFDIENIYFSKDIDMLTSDSLEAEWKRRKQYLGPSFKE 219


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = -2

Query: 183 DPSSYVKMNSTLIKNIFIQKSK 118
           DPSS++K+NS  I + F++KSK
Sbjct: 234 DPSSFIKINSKEIID-FLEKSK 254


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 407 FTIIRQTRRC*YKLVFC*ICKCYDF*WCFSSMSN 508
           F+++R  R   +   +C  C+C    W FS  SN
Sbjct: 535 FSLLRFLRADPFAYYYCLQCECKSLHWRFSDRSN 568


>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 490 TPSEVITFTDLAKYQFVSTPSC 425
           TP  +++ T+  K+ F+  P C
Sbjct: 148 TPKNIVSITEQCKFSFLFAPMC 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,432,154
Number of Sequences: 5004
Number of extensions: 49757
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)