Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_F12
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48560.1 68416.m05302 acetolactate synthase, chloroplast / ac...    29   2.0  
At3g09100.2 68416.m01070 mRNA capping enzyme family protein simi...    29   2.0  
At3g09100.1 68416.m01071 mRNA capping enzyme family protein simi...    29   2.0  
At1g20370.1 68414.m02541 tRNA pseudouridine synthase family prot...    29   2.0  
At1g80680.1 68414.m09467 nucleoporin family protein contains Pfa...    29   3.5  

>At3g48560.1 68416.m05302 acetolactate synthase, chloroplast /
           acetohydroxy-acid synthase (ALS) nearly identical to
           SP|P17597 Acetolactate synthase, chloroplast precursor
           (EC 2.2.1.6, formerly EC 4.1.3.18) (Acetohydroxy-acid
           synthase) (ALS) {Arabidopsis thaliana}
          Length = 670

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 340 QQLLYPLNMPMFGEQYG-DYMIKIYHH*TDKKVLIQTGI 453
           Q+  +PL+   FGE     Y IK+    TD K +I TG+
Sbjct: 447 QKQKFPLSFKTFGEAIPPQYAIKVLDELTDGKAIISTGV 485


>At3g09100.2 68416.m01070 mRNA capping enzyme family protein similar
           to mRNA capping enzyme [Xenopus laevis] GI:7239232;
           contains Pfam profiles PF01331: mRNA capping enzyme
           catalytic domain, PF00782: Dual specificity phosphatase
           catalytic domain
          Length = 672

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -3

Query: 260 CWIVDTDTFFKQIT---PIRKIQKGIFDRIHHLT 168
           C+IVD    F+++    P R   +GI D++HH T
Sbjct: 391 CYIVDRSFRFRRVQMRFPFRHPTEGISDKVHHFT 424


>At3g09100.1 68416.m01071 mRNA capping enzyme family protein similar
           to mRNA capping enzyme [Xenopus laevis] GI:7239232;
           contains Pfam profiles PF01331: mRNA capping enzyme
           catalytic domain, PF00782: Dual specificity phosphatase
           catalytic domain
          Length = 471

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -3

Query: 260 CWIVDTDTFFKQIT---PIRKIQKGIFDRIHHLT 168
           C+IVD    F+++    P R   +GI D++HH T
Sbjct: 391 CYIVDRSFRFRRVQMRFPFRHPTEGISDKVHHFT 424


>At1g20370.1 68414.m02541 tRNA pseudouridine synthase family protein
           similar to SP|Q9WU56 tRNA pseudouridine synthase A (EC
           4.2.1.70) (Uracil hydrolyase) {Mus musculus}; contains
           Pfam profile PF01416: tRNA pseudouridine synthase
          Length = 549

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +3

Query: 228 FKKRIRINNPTAEFLGVGRLDNHQLXFIKYSEHWRGASATIIPTEHAHVWGAI-WRLHDQ 404
           FKK +RIN P A  +G+  LD  +  F  Y++ ++G+   +   E+  V     W+    
Sbjct: 407 FKKDVRINVPMAPEVGL-YLD--ECFFTSYNKRFKGSHEEVSMEEYKEVAEEFKWKYVYS 463

Query: 405 DLPSLDRQEGVDTNW 449
            + S + ++G    W
Sbjct: 464 HIGSAEEKDGAVAIW 478


>At1g80680.1 68414.m09467 nucleoporin family protein contains Pfam
            profile: PF04096 nucleoporin autopeptidase
          Length = 1046

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
 Frame = +3

Query: 336  ASATIIPTEHAHVWGAIWRLHDQ--DLPSLDRQEGVDTNWYFAKS---------VNVMTS 482
            A +  +   H+ +W     + D+  ++ + D   G+  ++Y  KS         V +   
Sbjct: 890  AHSLFLSANHSEIWRIATSMDDRKSEIENWDLGAGIYMSFYLLKSSLQEDADTMVELEPL 949

Query: 483  DGVSVQCRTYQQTINPPLRKNGEXLPLERR 572
            D  +  CR +   +N  L   G+ LP+E R
Sbjct: 950  DSTNESCRNFVGRLNESLAVWGDRLPVEAR 979


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,981,256
Number of Sequences: 28952
Number of extensions: 236390
Number of successful extensions: 388
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)