Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_F06
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    26   4.1  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    26   5.5  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   5.5  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   7.2  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    25   9.5  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    25   9.5  

>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
 Frame = +2

Query: 518 PYSLLTPPGFESRASDARDHSPSYESYSPRT------LAPPAHVSTPLGRS 652
           P ++ TP   ES      +   SY   SP          PPAH STP  RS
Sbjct: 113 PSNIETPVKIESPHVSQNNTFQSYSELSPNVETSLTMKTPPAHASTPKFRS 163


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +2

Query: 440 SPFYDAMPLKAKANLGMHLDSFRNSLP-YSLLTPPGFESRASDARDHSPSYESYSPRTLA 616
           SPF+ A+  KA  +L +H+   ++SL  Y+L    G    A   +  +PS  +    +  
Sbjct: 513 SPFWSAIIDKADGSLSLHILCEKSSLKIYNLEELTGSSQVAMKFKTITPSVNTSEDDSAN 572

Query: 617 PPAHVSTP 640
               +STP
Sbjct: 573 DQEIISTP 580


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 214 SPXWHDARTPLLPPPSVGSAPTTTDSQN 297
           SP +  + TP  PPP   S PT+ +SQN
Sbjct: 231 SPIFSSSSTPPPPPPRP-SQPTSGESQN 257


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 284 PTVKTEPMEDGSFSKEQTSGFYSEGFH 364
           PT+   P++ G+  K+ +SG YS   H
Sbjct: 269 PTIIKNPIDLGTMQKKFSSGVYSSAQH 295


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 419 RCVENVRSSLYLKKRVTRCEIPLNKSHWFVLSKSFHLPSVQF 294
           +C  ++  + Y+ KR+  C I ++ S    L   FH   V F
Sbjct: 242 KCTSSIDGNAYVLKRLQDCSINIDTSTVDKLKNVFHPNIVPF 283


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 440 KVLWYCRRCVENVRSS 393
           K +WYC+ C E  +SS
Sbjct: 286 KGIWYCKECEELAKSS 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,547,572
Number of Sequences: 5004
Number of extensions: 49905
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)