Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_F06
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1580 - 34576595-34576723,34576905-34576981,34577058-345771... 31 0.61
11_06_0610 - 25449085-25453284 30 1.9
01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011... 29 2.4
12_01_0359 + 2736797-2737050,2737801-2738153,2738583-2738821,273... 28 5.6
12_02_1012 - 25281820-25281987,25282337-25282409,25283370-252834... 28 7.5
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85... 28 7.5
04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,557... 27 9.9
01_05_0791 + 25267885-25267930,25268258-25268713,25268802-252688... 27 9.9
01_01_0956 + 7505206-7505322,7505860-7506723,7506841-7507260,750... 27 9.9
>04_04_1580 -
34576595-34576723,34576905-34576981,34577058-34577104,
34577864-34577964,34578114-34578203,34578647-34578763,
34578835-34578992,34579562-34579843,34580367-34580667
Length = 433
Score = 31.5 bits (68), Expect = 0.61
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +2
Query: 416 SVGSTREPSPFYDAMPL-KAKANLGMHLDSFRNSLPYSLLTPPGFESRASDARDHSPSYE 592
+V + PS F D P+ + + ++ Y LTP F + AS+ +P Y
Sbjct: 111 NVAAPHLPSNFQDLRPMCNGPPFMSYGQTASNRNVLYQNLTPYSFNAWASNNMPRNPVYT 170
Query: 593 SYSPRTLAPP 622
SY P + P
Sbjct: 171 SYHPTAIEDP 180
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = +2
Query: 491 HLDSFRNSLPYSLLTPPGFESRASDARDHSPSYESYSPRTLAPPAHVSTPLGRS 652
H S S P S +PP ES+AS +P + SP PP S P S
Sbjct: 636 HTPSPPESTPPSEKSPPTPESKASSPPPPTPEGHTPSPPKSTPPTEKSPPTPES 689
Score = 29.1 bits (62), Expect = 3.2
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = +2
Query: 410 PRSVGSTRE--PSPFYDAMPLKAKANLGMHLDSFRNSLPYSLLTPPGFESRASDARDHSP 583
P+S T + P+P ++ A G H+ S S P +PP ES AS +P
Sbjct: 674 PKSTPPTEKSPPTPESESSSPPPPAPEG-HMPSPPKSTPPVEKSPPTPESEASSPPPPAP 732
Query: 584 SYESYSPRTLAPPAHVSTPL 643
+ SP +PP S P+
Sbjct: 733 EGHTPSPPKSSPPEEKSPPI 752
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 512 SLPYSLLTPPGFESRASDARDHSPSYESYSPRTLAPPAHVSTPLGRS 652
S P + +PP ES+AS +P + SP PP+ S P S
Sbjct: 610 STPPAEKSPPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPES 656
>01_06_0430 + 29299970-29300031,29300162-29300294,29301057-29301160,
29302201-29302372,29302488-29302628,29302707-29303055,
29303133-29305477
Length = 1101
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 533 TPPGFESRASDARDHSPSYESYS-PRTLAPPAHVSTPLGR 649
+P G SR ++ R SP Y PRT P V PLG+
Sbjct: 1000 SPAGSFSRFTEQRRDSPVYSRVPVPRTSPKPVRVEPPLGK 1039
>12_01_0359 +
2736797-2737050,2737801-2738153,2738583-2738821,
2738916-2739035,2739115-2739162
Length = 337
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 410 ENVRSSLYLKKRVTRCEIPLNKSHW 336
ENV ++ LKK+ TRC K +W
Sbjct: 244 ENVSQAIGLKKKETRCSTSKRKKNW 268
>12_02_1012 -
25281820-25281987,25282337-25282409,25283370-25283420,
25283523-25283932,25284083-25284413,25285340-25285439,
25287091-25287370
Length = 470
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +3
Query: 270 RSYNHRQSKLNRWKMEAFRKNKPVAFIQRDFTARHPLLQVKTRTDILHAASAVPENLHRF 449
R + + R K EA V ++R+ AR + R IL A+ V E LH F
Sbjct: 37 RERERERRRRRRRKREAAAAASEVVMVKRELLARCMTCPLCRR--ILRDATTVSECLHTF 94
Query: 450 TTQCL*K 470
+C+ K
Sbjct: 95 CRKCIYK 101
>07_01_0115 +
851505-852368,852611-852730,853000-853020,853253-853369,
853466-853555,853730-853837,853897-853932,853933-854022
Length = 481
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 551 SRASDARDHSPSYESYSPRTLAPPAHVSTP 640
SR+ DHS + S +PR LA P+ +TP
Sbjct: 153 SRSERFADHSTPFMSRTPRFLASPSPKTTP 182
>04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,
5579676-5579795,5581616-5581744,5581828-5581953,
5582945-5583000,5583084-5583183,5585155-5585272,
5585374-5585583,5585902-5586226,5587094-5587187,
5588021-5588129,5588246-5588514,5589153-5589280,
5589983-5590217,5590858-5591046,5591326-5591609,
5591698-5591890,5592040-5592207,5592429-5592514,
5594391-5594550
Length = 1412
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 339 LVCSFEKLPSSIGSVLTVGGCRSGPHAWGWEEW 241
LV ++E SI S+L+V + P AW W++W
Sbjct: 989 LVAAYEWWEGSIHSILSV---LAYPCAWSWKQW 1018
>01_05_0791 +
25267885-25267930,25268258-25268713,25268802-25268832,
25268949-25269255
Length = 279
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 151 SCAVCNFISVTTKGEGMLSCASPXWHDARTPLLPPPSVGSAPTTTDS 291
S C + + + G+ ML SP TP+ P + PTT D+
Sbjct: 168 SSGSCQYSASSGGGQNMLPPPSPTTLPPPTPMTPTTPMTPTPTTPDT 214
>01_01_0956 +
7505206-7505322,7505860-7506723,7506841-7507260,
7508091-7508342,7508696-7508953,7509798-7509877,
7509959-7510070,7510492-7510541,7511070-7511171,
7511215-7511276,7511888-7511928
Length = 785
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = -1
Query: 497 PSAFPDWL*LLKALRRKTVKVLWYCRRCVENVRSSLYLKKR 375
P AF DWL + CR C N R S +K+R
Sbjct: 744 PWAFCDWLRHYFVKFETHISTFIICRSCTGNARKSYNMKRR 784
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,778,094
Number of Sequences: 37544
Number of extensions: 366355
Number of successful extensions: 1096
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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