Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_F06
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_47718| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_38618| Best HMM Match : PhdYeFM (HMM E-Value=3.1)                   28   5.8  
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_48389| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_7216| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  
SB_32350| Best HMM Match : DUF1566 (HMM E-Value=2.6)                   28   7.6  

>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +2

Query: 425 STREPSPFYDAMPLKAKANLGMHLDS--FRNSLPYSLLTPPGFESRASDARDHSP-SYES 595
           S+    P     PLK  +N    L +   +++ P  L TPP  +S  ++ R H+P S +S
Sbjct: 44  SSSTSRPTNALQPLKPPSNTPQQLTTPPHQSNTPRPL-TPPSRQS--NNPRPHTPPSCQS 100

Query: 596 YSPRTLAPPAHVS 634
            +PR L PP   S
Sbjct: 101 NTPRPLTPPPRQS 113


>SB_47718| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
 Frame = -1

Query: 515 DCCGTNPSAFPDWL*LLKALRRKTVKVLWYCRRCVENVRSSLYLKKRVTRCEIPLNKSHW 336
           +C  T+PS +   L L   + R+ V   WY RR  +N       KK+  R    + +   
Sbjct: 23  NCAVTHPSTYRALLSLTSVIGREPVLSQWYGRR-RQNCSCEYIDKKKEMRTAHGIPRRSP 81

Query: 335 FVLSKSFHLPSVQF*LSVVVGADPTLGG--GRSGVRASCQ 222
             +   F+   +   L+ V+G +P L    GR     SC+
Sbjct: 82  IQVLTCFNRALLS--LTTVIGREPVLSQWYGRRRQNCSCE 119


>SB_38618| Best HMM Match : PhdYeFM (HMM E-Value=3.1)
          Length = 370

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +3

Query: 366 ARHPLLQVKTRTDILHAASAVPENLHRFTTQCL*KLKPI 482
           ARHPL   K + DIL    A      R   QCL +L+PI
Sbjct: 7   ARHPLPSCKKQRDILRKQKA---KRRRRIKQCLKRLRPI 42


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/33 (57%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 211 ASPXWHDA-RTPLLPP-PSVGSAPTTTDSQN*T 303
           ASP    A   P LPP PSV S PTT  SQN T
Sbjct: 759 ASPKSKSAVEAPELPPRPSVASKPTTLLSQNPT 791


>SB_48389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/57 (22%), Positives = 31/57 (54%)
 Frame = +3

Query: 273 SYNHRQSKLNRWKMEAFRKNKPVAFIQRDFTARHPLLQVKTRTDILHAASAVPENLH 443
           +Y+  ++K    + E   K+  +AF++++   +  LL+ +T+    ++   V EN+H
Sbjct: 151 NYHGIEAKSRILEKELLLKSSQLAFLEKELEEQQRLLEEETKEIDSYSNQLVDENIH 207


>SB_7216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1400

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/25 (36%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +3

Query: 267 VRSYNHRQSKLNRWKMEAF-RKNKP 338
           + + NHR+S++NRW + ++ +K+ P
Sbjct: 232 INAENHRESQVNRWSVPSYVKKSSP 256


>SB_32350| Best HMM Match : DUF1566 (HMM E-Value=2.6)
          Length = 135

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 515 DCCGTNPSAFPDWL*LLKALRRKTVKVLWYCRRCVENVRSSLYL 384
           +C  T PS +   L L   + R+ V   WY RR    +RS  Y+
Sbjct: 89  NCAVTRPSTYRALLSLTSVIGREPVLSQWYGRRRQNCLRSIYYI 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,794,562
Number of Sequences: 59808
Number of extensions: 404263
Number of successful extensions: 1252
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)