Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_F06
(653 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U52426-1|AAC51627.1| 685|Homo sapiens GOK protein. 32 2.1
BC021300-1|AAH21300.1| 685|Homo sapiens stromal interaction mol... 32 2.1
Y14690-1|CAA75002.1| 1496|Homo sapiens procollagen alpha 2(V) pr... 30 8.3
X72889-1|CAA51407.1| 1586|Homo sapiens HBRM protein. 30 8.3
X04758-1|CAA28454.1| 1099|Homo sapiens protein ( Human mRNA for ... 30 8.3
D26155-1|BAA05142.1| 1572|Homo sapiens transcriptional activator... 30 8.3
BC040029-1|AAH40029.1| 298|Homo sapiens SMARCA2 protein protein. 30 8.3
AL359076-5|CAI12969.1| 559|Homo sapiens SWI/SNF related, matrix... 30 8.3
AL359076-4|CAI12968.1| 1572|Homo sapiens SWI/SNF related, matrix... 30 8.3
AL359076-3|CAI12967.1| 1590|Homo sapiens SWI/SNF related, matrix... 30 8.3
AL359076-2|CAI12966.1| 155|Homo sapiens SWI/SNF related, matrix... 30 8.3
AL138755-9|CAI14600.1| 1572|Homo sapiens SWI/SNF related, matrix... 30 8.3
AL138755-8|CAI14599.1| 1590|Homo sapiens SWI/SNF related, matrix... 30 8.3
>U52426-1|AAC51627.1| 685|Homo sapiens GOK protein.
Length = 685
Score = 31.9 bits (69), Expect = 2.1
Identities = 23/66 (34%), Positives = 28/66 (42%)
Frame = +2
Query: 422 GSTREPSPFYDAMPLKAKANLGMHLDSFRNSLPYSLLTPPGFESRASDARDHSPSYESYS 601
GS E P A+ KA L LD + + S PPG +R HSPS S
Sbjct: 566 GSLVEKLPDSPALAKKALLALNHGLDKAHSLMELSPSAPPGGSPHLDSSRSHSPS--SPD 623
Query: 602 PRTLAP 619
P T +P
Sbjct: 624 PDTPSP 629
>BC021300-1|AAH21300.1| 685|Homo sapiens stromal interaction
molecule 1 protein.
Length = 685
Score = 31.9 bits (69), Expect = 2.1
Identities = 23/66 (34%), Positives = 28/66 (42%)
Frame = +2
Query: 422 GSTREPSPFYDAMPLKAKANLGMHLDSFRNSLPYSLLTPPGFESRASDARDHSPSYESYS 601
GS E P A+ KA L LD + + S PPG +R HSPS S
Sbjct: 566 GSLVEKLPDSPALAKKALLALNHGLDKAHSLMELSPSAPPGGSPHLDSSRSHSPS--SPD 623
Query: 602 PRTLAP 619
P T +P
Sbjct: 624 PDTPSP 629
>Y14690-1|CAA75002.1| 1496|Homo sapiens procollagen alpha 2(V)
protein.
Length = 1496
Score = 29.9 bits (64), Expect = 8.3
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +2
Query: 509 NSLPYSLLTPPGFESRASDARDHSPSYESYSPRTLAPPAHVSTPLG 646
N P L PPG +A P E P PP H++ LG
Sbjct: 1186 NPGPLGPLGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPGHLTAALG 1231
>X72889-1|CAA51407.1| 1586|Homo sapiens HBRM protein.
Length = 1586
Score = 29.9 bits (64), Expect = 8.3
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = +2
Query: 416 SVGSTREPSPFYDAM--PLKAKANLGMHLDSFRNSLPYSLLTPP--GFESRASDARDHSP 583
++GST P M P+ + G+ D S+ + + PP G S HS
Sbjct: 59 TMGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQ 118
Query: 584 SYESYSPRTLAPPAHVSTPL 643
Y S P L P HVS+P+
Sbjct: 119 GYMSPHPSPLGAPEHVSSPM 138
>X04758-1|CAA28454.1| 1099|Homo sapiens protein ( Human mRNA for
pro-alpha 2 (V) collagen chain. ).
Length = 1099
Score = 29.9 bits (64), Expect = 8.3
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +2
Query: 509 NSLPYSLLTPPGFESRASDARDHSPSYESYSPRTLAPPAHVSTPLG 646
N P L PPG +A P E P PP H++ LG
Sbjct: 789 NPGPLGPLGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPGHLTAALG 834
>D26155-1|BAA05142.1| 1572|Homo sapiens transcriptional activator
hSNF2a protein.
Length = 1572
Score = 29.9 bits (64), Expect = 8.3
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = +2
Query: 416 SVGSTREPSPFYDAM--PLKAKANLGMHLDSFRNSLPYSLLTPP--GFESRASDARDHSP 583
++GST P M P+ + G+ D S+ + + PP G S HS
Sbjct: 59 TMGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQ 118
Query: 584 SYESYSPRTLAPPAHVSTPL 643
Y S P L P HVS+P+
Sbjct: 119 GYMSPHPSPLGAPEHVSSPM 138
>BC040029-1|AAH40029.1| 298|Homo sapiens SMARCA2 protein protein.
Length = 298
Score = 29.9 bits (64), Expect = 8.3
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = +2
Query: 416 SVGSTREPSPFYDAM--PLKAKANLGMHLDSFRNSLPYSLLTPP--GFESRASDARDHSP 583
++GST P M P+ + G+ D S+ + + PP G S HS
Sbjct: 59 TMGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQ 118
Query: 584 SYESYSPRTLAPPAHVSTPL 643
Y S P L P HVS+P+
Sbjct: 119 GYMSPHPSPLGAPEHVSSPM 138
>AL359076-5|CAI12969.1| 559|Homo sapiens SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, sub
protein.
Length = 559
Score = 29.9 bits (64), Expect = 8.3
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = +2
Query: 416 SVGSTREPSPFYDAM--PLKAKANLGMHLDSFRNSLPYSLLTPP--GFESRASDARDHSP 583
++GST P M P+ + G+ D S+ + + PP G S HS
Sbjct: 59 TMGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQ 118
Query: 584 SYESYSPRTLAPPAHVSTPL 643
Y S P L P HVS+P+
Sbjct: 119 GYMSPHPSPLGAPEHVSSPM 138
>AL359076-4|CAI12968.1| 1572|Homo sapiens SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, sub
protein.
Length = 1572
Score = 29.9 bits (64), Expect = 8.3
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = +2
Query: 416 SVGSTREPSPFYDAM--PLKAKANLGMHLDSFRNSLPYSLLTPP--GFESRASDARDHSP 583
++GST P M P+ + G+ D S+ + + PP G S HS
Sbjct: 59 TMGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQ 118
Query: 584 SYESYSPRTLAPPAHVSTPL 643
Y S P L P HVS+P+
Sbjct: 119 GYMSPHPSPLGAPEHVSSPM 138
>AL359076-3|CAI12967.1| 1590|Homo sapiens SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, sub
protein.
Length = 1590
Score = 29.9 bits (64), Expect = 8.3
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = +2
Query: 416 SVGSTREPSPFYDAM--PLKAKANLGMHLDSFRNSLPYSLLTPP--GFESRASDARDHSP 583
++GST P M P+ + G+ D S+ + + PP G S HS
Sbjct: 59 TMGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQ 118
Query: 584 SYESYSPRTLAPPAHVSTPL 643
Y S P L P HVS+P+
Sbjct: 119 GYMSPHPSPLGAPEHVSSPM 138
>AL359076-2|CAI12966.1| 155|Homo sapiens SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, sub
protein.
Length = 155
Score = 29.9 bits (64), Expect = 8.3
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = +2
Query: 416 SVGSTREPSPFYDAM--PLKAKANLGMHLDSFRNSLPYSLLTPP--GFESRASDARDHSP 583
++GST P M P+ + G+ D S+ + + PP G S HS
Sbjct: 59 TMGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQ 118
Query: 584 SYESYSPRTLAPPAHVSTPL 643
Y S P L P HVS+P+
Sbjct: 119 GYMSPHPSPLGAPEHVSSPM 138
>AL138755-9|CAI14600.1| 1572|Homo sapiens SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, sub
protein.
Length = 1572
Score = 29.9 bits (64), Expect = 8.3
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = +2
Query: 416 SVGSTREPSPFYDAM--PLKAKANLGMHLDSFRNSLPYSLLTPP--GFESRASDARDHSP 583
++GST P M P+ + G+ D S+ + + PP G S HS
Sbjct: 59 TMGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQ 118
Query: 584 SYESYSPRTLAPPAHVSTPL 643
Y S P L P HVS+P+
Sbjct: 119 GYMSPHPSPLGAPEHVSSPM 138
>AL138755-8|CAI14599.1| 1590|Homo sapiens SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, sub
protein.
Length = 1590
Score = 29.9 bits (64), Expect = 8.3
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = +2
Query: 416 SVGSTREPSPFYDAM--PLKAKANLGMHLDSFRNSLPYSLLTPP--GFESRASDARDHSP 583
++GST P M P+ + G+ D S+ + + PP G S HS
Sbjct: 59 TMGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQ 118
Query: 584 SYESYSPRTLAPPAHVSTPL 643
Y S P L P HVS+P+
Sbjct: 119 GYMSPHPSPLGAPEHVSSPM 138
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,735,729
Number of Sequences: 237096
Number of extensions: 2039834
Number of successful extensions: 5166
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5157
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -