Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_F06
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical ...    29   2.9  
U80029-12|AAB37591.1|  456|Caenorhabditis elegans Hypothetical p...    29   3.8  
U64856-6|AAB04989.1|  406|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U64856-5|AAT81185.1|  301|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z83111-3|CAB05536.1|  361|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AF039039-1|AAB94180.2|  653|Caenorhabditis elegans Hypothetical ...    28   6.7  

>AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical
           protein C30F12.1 protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 506 RNSLPYSLLTPPGFESRASDARDHSPSYESYSPRTLAPPAHVSTP 640
           RNS P  ++T     S AS +  H P  +S S  T +P    STP
Sbjct: 173 RNS-PEPIMTSSASSSSASSSSSHRPIRQSVSIATSSPATSSSTP 216


>U80029-12|AAB37591.1|  456|Caenorhabditis elegans Hypothetical
           protein T20D4.6 protein.
          Length = 456

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 250 PPPSVGSAPTTTDSQN*TDGRWKL 321
           PPP  GS P T DS+  TD  + L
Sbjct: 360 PPPGYGSLPMTDDSEKGTDAPYPL 383


>U64856-6|AAB04989.1|  406|Caenorhabditis elegans Hypothetical
           protein T25F10.6a protein.
          Length = 406

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 548 ESRASDARDHSPSYESYSPRTLAPPAHVSTP 640
           E+   +A + +P+  + SPR  APPA + +P
Sbjct: 28  EAEEPEAEEEAPAPAAASPRAAAPPASLKSP 58


>U64856-5|AAT81185.1|  301|Caenorhabditis elegans Hypothetical
           protein T25F10.6b protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 548 ESRASDARDHSPSYESYSPRTLAPPAHVSTP 640
           E+   +A + +P+  + SPR  APPA + +P
Sbjct: 28  EAEEPEAEEEAPAPAAASPRAAAPPASLKSP 58


>Z83111-3|CAB05536.1|  361|Caenorhabditis elegans Hypothetical
           protein F57G8.4 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 154 KILFMNSXYTLXSFHLFFLTHIKMINVFNGYVLSVPR 44
           ++ F N   T+ ++   F T   MIN F+ ++LS PR
Sbjct: 8   QLFFSNLVATVGAYEYIFATIELMINCFHIFILSRPR 44


>AF039039-1|AAB94180.2|  653|Caenorhabditis elegans Hypothetical
           protein T08B1.6 protein.
          Length = 653

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 410 ENVRSSLYLKKRVTRCEIPLNKSHWFVLSKSFHL 309
           E +R S+ + K +T C   + K+ W VL++S  L
Sbjct: 21  ERIRESVQVPKPITGCPDGITKTVWDVLTRSAQL 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,358,938
Number of Sequences: 27780
Number of extensions: 289027
Number of successful extensions: 852
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)