Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_F06
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43680.2 68415.m05430 calmodulin-binding family protein simil...    30   1.5  
At2g43680.1 68415.m05429 calmodulin-binding family protein simil...    30   1.5  
At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein ...    29   2.0  
At4g26910.2 68417.m03873 2-oxoacid dehydrogenase family protein ...    29   2.7  
At4g26910.1 68417.m03872 2-oxoacid dehydrogenase family protein ...    29   2.7  
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea...    29   2.7  
At3g16960.1 68416.m02167 hypothetical protein                          29   3.6  

>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 669

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
 Frame = +2

Query: 437 PSPFYDAMPLKAKANLGMHLDSFRNSLPYSLLTPPGFES-RASDARDHSP-SYESYSPRT 610
           P PF  + P  A AN    L      +P   +TP    S R S  R  SP +  S  P  
Sbjct: 159 PKPFDRSKPSSASANAPPTLRPASTRVPSQRITPHSVPSPRPSSPRGASPQAISSKPPSP 218

Query: 611 LAPPAHVSTP 640
            A P  + TP
Sbjct: 219 RAEPPTLDTP 228


>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 668

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
 Frame = +2

Query: 437 PSPFYDAMPLKAKANLGMHLDSFRNSLPYSLLTPPGFES-RASDARDHSP-SYESYSPRT 610
           P PF  + P  A AN    L      +P   +TP    S R S  R  SP +  S  P  
Sbjct: 158 PKPFDRSKPSSASANAPPTLRPASTRVPSQRITPHSVPSPRPSSPRGASPQAISSKPPSP 217

Query: 611 LAPPAHVSTP 640
            A P  + TP
Sbjct: 218 RAEPPTLDTP 227


>At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein
           similar to SP|Q01205 Dihydrolipoamide
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex, mitochondrial precursor (EC
           2.3.1.61) {Rattus norvegicus}; contains Pfam profiles
           PF00198: 2-oxo acid dehydrogenases acyltransferase
           (catalytic domain), PF00364: Biotin-requiring enzyme
          Length = 464

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 68  WLRPFSAAAGDVVIALTSH 12
           W+RPFS+ +GDVV A+  H
Sbjct: 82  WVRPFSSDSGDVVEAVVPH 100


>At4g26910.2 68417.m03873 2-oxoacid dehydrogenase family protein
           similar to SP|P36957 Dihydrolipoamide
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex, mitochondrial precursor (EC
           2.3.1.61) {Homo sapiens}; contains Pfam profiles
           PF00198: 2-oxo acid dehydrogenases acyltransferase
           (catalytic domain), PF00364: Biotin-requiring enzyme
          Length = 463

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 68  WLRPFSAAAGDVVIALTSH 12
           W+RPFSA  GD V A+  H
Sbjct: 80  WVRPFSAETGDTVEAVVPH 98


>At4g26910.1 68417.m03872 2-oxoacid dehydrogenase family protein
           similar to SP|P36957 Dihydrolipoamide
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex, mitochondrial precursor (EC
           2.3.1.61) {Homo sapiens}; contains Pfam profiles
           PF00198: 2-oxo acid dehydrogenases acyltransferase
           (catalytic domain), PF00364: Biotin-requiring enzyme
          Length = 464

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 68  WLRPFSAAAGDVVIALTSH 12
           W+RPFSA  GD V A+  H
Sbjct: 81  WVRPFSAETGDTVEAVVPH 99


>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
           family protein similar to Sec31p (GI:13928450)  {Oryza
           sativa}
          Length = 969

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = +2

Query: 488 MHLDSFRNSLPYSLLTPPGFESRASDARDHSPSYESYSPRTLAPPAHVSTP 640
           M   SF  S   +   PPG  S  S      P   S  P+T+APP    TP
Sbjct: 781 MDYHSFNRSAGPAYNAPPGPGSYRSIHSQVGPYINSKIPQTVAPPVRPMTP 831


>At3g16960.1 68416.m02167 hypothetical protein
          Length = 114

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 199 MLSCASPXWHDARTPLLPPPSVGSAPTTTDSQN*TDGRWKL 321
           ++ CAS     A+ P+  PPSV +  TT    N   G W +
Sbjct: 12  IVMCASVTMSLAQNPMASPPSVENPNTTVVIHNALSGYWPM 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,678,389
Number of Sequences: 28952
Number of extensions: 278831
Number of successful extensions: 813
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)