Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_F05
(364 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces... 64 6e-12
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra... 25 2.7
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch... 25 3.6
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 4.8
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 25 4.8
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 24 6.3
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 24 6.3
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 24 6.3
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 24 6.3
SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2 |Sch... 24 8.3
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 24 8.3
>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 61
Score = 64.1 bits (149), Expect = 6e-12
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = +1
Query: 52 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSKIFNGIKGFARRVT 204
MAKSKNHTNHNQN+KAHRNGIK+P+K R++S +K F + FA R T
Sbjct: 1 MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAK-FRRNQKFANRGT 50
>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 2.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 25 FKVD*KLIKMAKSKNHTNHNQNRKAHRNGIKKPRK 129
+K+D + +AK + NHN ++ A + I +PRK
Sbjct: 333 YKLD--ICGLAKRDDRKNHNHSKPATQANILQPRK 365
>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 25.0 bits (52), Expect = 3.6
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +1
Query: 40 KLIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGH 156
+L + +S TN +Q + H N KT H+ H
Sbjct: 138 QLTQQQQSLPQTNEHQRARTHSNANNHFTKTHHQGQRSH 176
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.6 bits (51), Expect = 4.8
Identities = 8/35 (22%), Positives = 21/35 (60%)
Frame = +1
Query: 61 SKNHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSK 165
S +++ NR+ +R +++P ++ + G+GS+
Sbjct: 201 SNFESSNGSNRRRYRTQMEEPLSSKRRNRFGNGSR 235
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 24.6 bits (51), Expect = 4.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 83 TKTAKLTEMVSKSQGRPGTN 142
T A +T++VSK G PG N
Sbjct: 220 TNPADITDLVSKYAGPPGNN 239
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 24.2 bits (50), Expect = 6.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 70 HTNHNQNRKAHRNGIKKPRKTRHES 144
HTN +NR+ + G K R R E+
Sbjct: 887 HTNPQENRRRDKGGSVKRRNERTEN 911
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 24.2 bits (50), Expect = 6.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 183 FDSVKNFGSMXKGGFVPGLPWLFDTISVSFA 91
FDS KN +VPGL +FD I V+ A
Sbjct: 108 FDSEKNKLDYKAVTYVPGLYKIFDEIIVNAA 138
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 24.2 bits (50), Expect = 6.3
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 60 LCHFDEFSIHFESED 16
+CHF+E SI ES++
Sbjct: 1 MCHFNELSIEIESKN 15
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 24.2 bits (50), Expect = 6.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 8 LVLSSDSKWIENSSKWQSQRIIQ 76
L+ + S+W S +W+S R IQ
Sbjct: 1462 LIFCTPSQWDSLSKRWRSMRSIQ 1484
>SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 23.8 bits (49), Expect = 8.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 131 PGTNPPLXMDPKFLTESKVLQE 196
P PPL PKFL +L E
Sbjct: 194 PDAGPPLVQAPKFLAPYDILVE 215
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 23.8 bits (49), Expect = 8.3
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +1
Query: 67 NHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSKIFN 174
+H NH+++RK + + +T H L I N
Sbjct: 850 DHINHSKDRKLNTLALSSLLRTNHPDVLAVLDSIMN 885
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,108,000
Number of Sequences: 5004
Number of extensions: 17460
Number of successful extensions: 57
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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