Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_F05
(364 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) simi... 60 3e-10
At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) simi... 60 4e-10
At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein, A... 35 0.014
At3g25950.1 68416.m03234 hypothetical protein 29 0.70
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 28 1.6
At1g12600.1 68414.m01463 hypothetical protein 28 2.1
At4g23010.1 68417.m03319 UDP-galactose transporter-related conta... 26 6.5
At4g01925.1 68417.m00256 DC1 domain-containing protein low simil... 26 6.5
At3g13760.1 68416.m01736 DC1 domain-containing protein contains ... 26 6.5
At1g62720.1 68414.m07079 pentatricopeptide (PPR) repeat-containi... 26 6.5
At4g35940.1 68417.m05113 expressed protein 26 8.6
At2g27775.2 68415.m03367 expressed protein 26 8.6
At2g27775.1 68415.m03366 expressed protein 26 8.6
At1g72010.1 68414.m08324 TCP family transcription factor, putati... 26 8.6
At1g05600.1 68414.m00580 pentatricopeptide (PPR) repeat-containi... 26 8.6
>At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) similar
to 60S ribosomal protein L29 GB:P25886 from (Rattus
norvegicus)
Length = 83
Score = 60.5 bits (140), Expect = 3e-10
Identities = 28/50 (56%), Positives = 35/50 (70%)
Frame = +1
Query: 49 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSKIFNGIKGFARR 198
+MAKSKNHT HNQ+ KAH+NGIKKPR+ RH T G K + +AR+
Sbjct: 22 EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRN-QRYARK 70
>At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) similar
to ribosomal protein L29 GI:7959366 [Panax ginseng]
Length = 61
Score = 60.1 bits (139), Expect = 4e-10
Identities = 28/49 (57%), Positives = 34/49 (69%)
Frame = +1
Query: 52 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSKIFNGIKGFARR 198
MAKSKNHT HNQ+ KAH+NGIKKPR+ RH T G K + +AR+
Sbjct: 1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRN-QRYARK 48
>At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein,
Arabidopsis thaliana, AJ011845
Length = 400
Score = 35.1 bits (77), Expect = 0.014
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 64 KNHTNHNQNRKAHRNGIKKPRKTRHESTLGH 156
KNHT H++ R ++ G K RKT +T GH
Sbjct: 88 KNHTFHHKMRMSYSEGSKMKRKTHRNTTFGH 118
>At3g25950.1 68416.m03234 hypothetical protein
Length = 251
Score = 29.5 bits (63), Expect = 0.70
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 183 FDSVKNFGSMXKGGFVPGLPWLFDTISVSFAVLVMICMIL 64
+D +GS G VP WL + + FA+LV I +L
Sbjct: 195 YDMATFYGSGAADGVVPRWAWLSWLVVIGFAILVSILWVL 234
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 52 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSKIFNGIKGFARRV 201
+ +S H + + + NG KK +KTR E K+ ++ RRV
Sbjct: 237 VGRSSRHEDSPKRKSVEDNGEKKEKKTREEELEDEQKKLDEEVEKRRRRV 286
>At1g12600.1 68414.m01463 hypothetical protein
Length = 349
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 201 YPSCKTFDSVKNFGSMXKGGFVPGLPWLFDTISVSFAVLVMICMIL 64
YP+ F S K M G F+PGL + A+L++I +IL
Sbjct: 111 YPAQIMFKSTKVLPVMVMGAFIPGLRRKYPVHEYISAMLLVIGLIL 156
>At4g23010.1 68417.m03319 UDP-galactose transporter-related contains
weak similarity to UDP-galactose transporter related
isozyme 1 (GI:1669562) [Mus musculus]
Length = 345
Score = 26.2 bits (55), Expect = 6.5
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 201 YPSCKTFDSVKNFGSMXKGGFVPGLPWLFDTISVSFAVLVMICMIL 64
YP+ F S K M G F+PGL + A L+++ +IL
Sbjct: 108 YPAQIMFKSTKVLPVMIMGAFIPGLRRKYPVHEYISAFLLVLGLIL 153
>At4g01925.1 68417.m00256 DC1 domain-containing protein low
similarity to UV-B light insensitive ULI3 [Arabidopsis
thaliana] GI:17225050; contains Pfam profile PF03107:
DC1 domain
Length = 399
Score = 26.2 bits (55), Expect = 6.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 112 YHFCELCGFGYDLYDSLTLP 53
YH CE CGF DLY ++ P
Sbjct: 65 YH-CETCGFDVDLYCAMYPP 83
>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 112 YHFCELCGFGYDLYDSLTLPF**VFNP 32
++ C +CGF DL +LTLP + NP
Sbjct: 182 FYRCLICGFCLDLSCALTLPPLTIANP 208
>At1g62720.1 68414.m07079 pentatricopeptide (PPR) repeat-containing
protein contains multiple PPR repeats Pfam Profile:
PF01535
Length = 426
Score = 26.2 bits (55), Expect = 6.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 112 YHFCELCGFGYDLY 71
+H E+CG G+DLY
Sbjct: 33 FHHMEVCGIGHDLY 46
>At4g35940.1 68417.m05113 expressed protein
Length = 451
Score = 25.8 bits (54), Expect = 8.6
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = +1
Query: 70 HTNHNQNRKAHRNGIKKPRKTRHESTLGHGSKIFNGI--KGFARRVT*SQPSNSRGRLXE 243
H N+N+ R + + +E + + NG +R+ QP N R E
Sbjct: 188 HNNNNEKRIEKQQPLNGRHNNNNEKLMEKQQPL-NGRHNNNNEKRIEKQQPLNGRHNNKE 246
Query: 244 KLPEKQRP 267
K EKQ+P
Sbjct: 247 KQKEKQQP 254
>At2g27775.2 68415.m03367 expressed protein
Length = 112
Score = 25.8 bits (54), Expect = 8.6
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 56 QSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLXMDPKFLTESKV 187
+S ++ I +TA ++S S+ RP P P+F T S++
Sbjct: 9 RSATFMRSINRTATARNLIS-SRARPSVPNPNFTSPRFNTSSRI 51
>At2g27775.1 68415.m03366 expressed protein
Length = 100
Score = 25.8 bits (54), Expect = 8.6
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 56 QSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLXMDPKFLTESKV 187
+S ++ I +TA ++S S+ RP P P+F T S++
Sbjct: 9 RSATFMRSINRTATARNLIS-SRARPSVPNPNFTSPRFNTSSRI 51
>At1g72010.1 68414.m08324 TCP family transcription factor, putative
PCF2 (GP:2580440) [Oryza sativa]
Length = 375
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +1
Query: 55 AKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSKI 168
A S T+ ++ +KKP K RH G G +I
Sbjct: 40 ATSSTSTSSGSALAVVKSAVKKPTKDRHTKVDGRGRRI 77
>At1g05600.1 68414.m00580 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 504
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 94 KAHRNGIKKPRKTRHESTLGHGSKIFNGIKGFARRVT 204
K R G+K P++ H GH GI+ R +T
Sbjct: 251 KILRKGLKAPKRCYHHIEAGHWESSSEGIERVKRLLT 287
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,865,274
Number of Sequences: 28952
Number of extensions: 96245
Number of successful extensions: 303
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -