Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_F04
         (443 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   4.0  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    25   6.9  
SPAC222.04c |ies6||chromatin remodeling complex subunit Ies6 |Sc...    25   6.9  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    25   6.9  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    24   9.1  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    24   9.1  

>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 145 YFTLKNTKALKTKEDADPTKQKTKS 219
           YFT K++     KEDA  TKQ   S
Sbjct: 774 YFTSKDSNLQTLKEDASSTKQAKDS 798


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 45  LNYKYYRHENDLCIFNCCLSGYNYETTVFEFFI 143
           L Y   + E+D C F    S +++ T+   FFI
Sbjct: 120 LRYFLCKKESDSCYFGNASSSFHFVTSPSTFFI 152


>SPAC222.04c |ies6||chromatin remodeling complex subunit Ies6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +1

Query: 193 DPTKQKTKSFMVSWKKIPHLFLPKNFYCPEVNSTA-YTNK*PLY*LIYHNINVTNL 357
           DP + +   F  S  + P   LP+  YC      A YT+  P   L YHN  +  L
Sbjct: 41  DPVQNEPSKFSYSSIEAPPSVLPQPKYCDVTGLLAIYTD--PKTRLRYHNKEIYGL 94


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 33  KLNFLNYKYYRHENDLCIFNCCLSGYNYE-TTVFEFF 140
           K  F     Y H+ D+   +C +SGY+ E  TV + F
Sbjct: 254 KTTFQPPSEYCHDEDMDSLHCLMSGYSTEHHTVDDLF 290


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 262 KNFYCPEVNSTAYTNK*PL 318
           + F  PE+NST+Y+ K P+
Sbjct: 232 EQFASPEINSTSYSLKPPI 250


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 172 LKTKEDADPTKQKTKSFMVSWKKIPHLFLPKNFYC--PEVNSTAYTNK 309
           L+ K+    T  K  S +   KK P+    KNF+C     + TA +NK
Sbjct: 186 LRIKKSQLNTATKEISLLKKAKKFPNFPKLKNFFCSYSHRHETATSNK 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,429,909
Number of Sequences: 5004
Number of extensions: 25177
Number of successful extensions: 53
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)