Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_F04
         (443 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0207 + 11675204-11676542,11676829-11676962,11677171-116774...    27   5.1  
10_06_0031 + 9842608-9842677,9842862-9843019                           27   9.0  
02_04_0604 + 24287169-24287199,24287859-24288044,24288389-242889...    27   9.0  

>11_03_0207 +
           11675204-11676542,11676829-11676962,11677171-11677411,
           11677508-11677719,11677837-11677883,11677988-11678090,
           11678594-11678830
          Length = 770

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 30  LKLNFLNYKYYRHENDLCIFNCCLSGYNYETTVFEFFIVFHF 155
           LKL        RH N +C+   C+ G   E++V   F+V+ +
Sbjct: 519 LKLRLDLLAKLRHPNLVCLLGHCIDGEVDESSVKRVFLVYEY 560


>10_06_0031 + 9842608-9842677,9842862-9843019
          Length = 75

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 191 LTQQNKRLSHSWCHGRRYRICSC 259
           L  ++ R+  +WCHGRR   C+C
Sbjct: 52  LRGKHARVMRAWCHGRR---CNC 71


>02_04_0604 +
           24287169-24287199,24287859-24288044,24288389-24288923,
           24289244-24289280
          Length = 262

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 315 WLFISISRTVYFWTIKVFW 259
           WLF+ I  TVYF+ ++  W
Sbjct: 174 WLFLMIFMTVYFFVVRRKW 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,019,571
Number of Sequences: 37544
Number of extensions: 123400
Number of successful extensions: 239
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)