Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_F04
         (443 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45800.1 68416.m04957 hypothetical protein                          33   0.066
At2g26410.1 68415.m03169 calmodulin-binding family protein simil...    30   0.81 
At3g60790.1 68416.m06800 F-box protein-related contains weak hit...    27   7.5  

>At3g45800.1 68416.m04957 hypothetical protein
          Length = 563

 Score = 33.5 bits (73), Expect = 0.066
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 27  CLKLNFLNYKYYRHENDLCIFNCCLSGYNYETTVFEFFIVFHFEK 161
           C +  FL  KYY+   + C  N  L+ Y Y   +    ++FH  K
Sbjct: 42  CNRYIFLTLKYYKTNKENCYINEILASYKYPFNLITDSLIFHSSK 86


>At2g26410.1 68415.m03169 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 516

 Score = 29.9 bits (64), Expect = 0.81
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 154 LKNTKALKTKEDADPTKQKTKSFMVSWKKIPHLFLPK 264
           L NT+A+K+K +   T    K  +   KK P + LPK
Sbjct: 442 LANTEAVKSKVNVGTTSMPKKEVVADKKKPPQMVLPK 478


>At3g60790.1 68416.m06800 F-box protein-related contains weak hit to
           Pfam PF00646: F-box domain
          Length = 488

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 157 KNTKALKTKEDADPTKQKTKSFMVSWKKIPHLFLPKNFYCPEVNSTAYTNK 309
           K    L TK DA  T   +K ++  WK+IPHL +         N T+Y ++
Sbjct: 62  KILSTLSTK-DAVITSTLSKRWVDQWKRIPHLCVDMR-NIMRTNPTSYVHE 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,049,247
Number of Sequences: 28952
Number of extensions: 116958
Number of successful extensions: 245
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)