Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_E23
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo...    68   1e-12
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.3  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   7.0  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    25   7.0  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    25   9.2  

>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 185

 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
 Frame = +1

Query: 286 RNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNXVVLWDKIILXGENAVLX 465
           R     + F++  DLS L++WN K + +YL A Y T  +E N VV+WDKI+   E + + 
Sbjct: 65  RQQYAQVKFNMDADLSELWDWNTKHVVVYLVASYSTEKHEKNQVVVWDKILSSPEESKMF 124

Query: 466 FKNMNTK---YYFWDDGNGLKGHSNVTLTLSWNIIPNAGLLPNIQALGQHSFKFPIXYTQ 636
            K+  +    + F +  N  +G  N T TL W + P  G L      G +   F    TQ
Sbjct: 125 MKDTLSNIQAHPFNEYSNQFEG-KNATYTLHWTVSPKMGFLSWGAGPGSYEIPFHKIITQ 183


>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 559 IPNAGLLPNIQALGQHSFKFP-IXYTQT 639
           IP A L+P  + L   S++FP + Y+QT
Sbjct: 63  IPRAWLIPFHEFLNNRSYRFPKLDYSQT 90


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
            Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -2

Query: 273  SVVRYVFNXYFNCIHLGPSSVVHSAGLIKNSKKVRH---ASTLSVYVSIAFPLV 121
            + VR   +   NCI +GP       GL   S+KVR+    S  S YV  A  +V
Sbjct: 1112 NAVREGIDGIRNCIGVGPIMAYLVQGLFHPSRKVRNTYWTSYNSAYVQSADAMV 1165


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
 Frame = +1

Query: 460 LXFKNMNTKYYFWDDGNG-----LKGHSNVTLTLSWNIIPNAGLLPNIQALGQHSFKFP 621
           L   N+N++   WD            H N   ++SW+   +  +  N +AL  +   +P
Sbjct: 238 LLVSNLNSQIRLWDYRRNRVVRIFDSHVNTRYSMSWDCYSSKNIPKNTEALPNNDSSYP 296


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = -2

Query: 357 FNVPVKEVGQICFKIES*EAKIISFXRCSVVRYVFNXYFN 238
           + +P+K +  IC  + S  +++ S  R   + + F+ +FN
Sbjct: 20  WKIPLKVLILICIAVASVSSRLFSVIRYESIIHEFDPWFN 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,739
Number of Sequences: 5004
Number of extensions: 42807
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)