Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_E23
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0238 - 21791139-21791264,21791862-21791948,21792713-217927...    92   3e-19
01_01_0202 + 1753394-1753667,1753934-1753977,1754105-1754152,175...    91   7e-19
11_02_0137 - 8702661-8703495,8703820-8704628                           28   5.4  

>09_06_0238 -
           21791139-21791264,21791862-21791948,21792713-21792766,
           21793199-21793261,21793363-21793410,21793626-21793688
          Length = 146

 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 47/113 (41%), Positives = 64/113 (56%)
 Frame = +1

Query: 235 TVKVXVKNVPDYGASXERNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNX 414
           T  V + N+  +      ND   +T ++  DLS+LF WN KQ+F+++ AEY TP N LN 
Sbjct: 17  TASVKILNINWFQKEANGNDEVSMTLNISADLSSLFTWNTKQVFVFVAAEYETPQNALNQ 76

Query: 415 VVLWDKIILXGENAVLXFKNMNTKYYFWDDGNGLKGHSNVTLTLSWNIIPNAG 573
           V LWD II   E+A       N KY F D G+ LKG  +  LT+ W+I+P  G
Sbjct: 77  VSLWDGIIPSKEHAKFLIHTTN-KYRFIDQGSNLKG-KDFNLTMHWHIMPKTG 127


>01_01_0202 +
           1753394-1753667,1753934-1753977,1754105-1754152,
           1754940-1755002,1755460-1755513,1756073-1756159,
           1756253-1756381
          Length = 232

 Score = 91.1 bits (216), Expect = 7e-19
 Identities = 50/145 (34%), Positives = 75/145 (51%)
 Frame = +1

Query: 199 CTVDYRTGAQMNTVKVXVKNVPDYGASXERNDLGFLTFDLKTDLSNLFNWNVKQLFLYLT 378
           C   ++ G Q+  +   V  +  +      ND   LTF+L  +L +LF W+ KQ+F++LT
Sbjct: 90  CLEFWKVGCQILILSTMVTKINRFHKQLNGNDKVTLTFNLSANLESLFTWSTKQVFVFLT 149

Query: 379 AEYITPSNELNXVVLWDKIILXGENAVLXFKNMNTKYYFWDDGNGLKGHSNVTLTLSWNI 558
           AEY    N LN V LWD II   + A L  + + +KY   D G+ L+G   V L L W++
Sbjct: 150 AEYENSKNSLNQVSLWDHIIPDKDKANLQVE-VKSKYPLIDQGSSLRG-KKVQLVLHWHV 207

Query: 559 IPNAGLLPNIQALGQHSFKFPIXYT 633
           +P AG++     +    F  P  YT
Sbjct: 208 MPKAGVMIR-DRMALSEFNLPDSYT 231


>11_02_0137 - 8702661-8703495,8703820-8704628
          Length = 547

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 23/93 (24%), Positives = 39/93 (41%)
 Frame = -2

Query: 411 IQFIAWCNVFGSEI*EQLFNVPVKEVGQICFKIES*EAKIISFXRCSVVRYVFNXYFNCI 232
           ++ I W    G+++      V V  +G I   ++S     + F R S     F   F  I
Sbjct: 46  LRLIIWLAYVGADM------VAVYALGLISQNVQSVNISSVGFSRSSNQLAFFWVPFLLI 99

Query: 231 HLGPSSVVHSAGLIKNSKKVRHASTLSVYVSIA 133
           HLG    + +  +  N+  +RH   L + V +A
Sbjct: 100 HLGGQDTMTAFSIKDNNLWLRHLLNLCIQVFLA 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,275,110
Number of Sequences: 37544
Number of extensions: 248076
Number of successful extensions: 544
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)