Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_E23
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14331-3|AAA28096.1|  180|Caenorhabditis elegans Hypothetical pr...   143   8e-35
AC084161-2|AAK29732.3|  782|Caenorhabditis elegans Hypothetical ...    32   0.30 
AF016653-2|AAC48225.2|  914|Caenorhabditis elegans Patched relat...    28   6.5  

>L14331-3|AAA28096.1|  180|Caenorhabditis elegans Hypothetical
           protein K12H4.4 protein.
          Length = 180

 Score =  143 bits (347), Expect = 8e-35
 Identities = 68/153 (44%), Positives = 90/153 (58%)
 Frame = +1

Query: 181 AVFYQPCTVDYRTGAQMNTVKVXVKNVPDYGASXERNDLGFLTFDLKTDLSNLFNWNVKQ 360
           A F     +DY    ++    V V+NV DY    ++ DL  L F+LK D S +FNWNVKQ
Sbjct: 25  ACFLSTVFLDYTVPTKLTVNDVKVRNVVDYATDEQQADLATLNFNLKVDFSKIFNWNVKQ 84

Query: 361 LFLYLTAEYITPSNELNXVVLWDKIILXGENAVLXFKNMNTKYYFWDDGNGLKGHSNVTL 540
           LF+YL AEY +  NE+N VVLWD+I+   +  V+    + +KYYF DDG  L  H NVT 
Sbjct: 85  LFVYLVAEYKSKVNEVNQVVLWDRIVERADRVVMDEIGVKSKYYFLDDGTNLLNHKNVTF 144

Query: 541 TLSWNIIPNAGLLPNIQALGQHSFKFPIXYTQT 639
            L +N+IPN+G L  +Q+  Q    FP  YT T
Sbjct: 145 VLRYNVIPNSGYLRLVQSSDQVVVPFPTTYTTT 177



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +2

Query: 107 MYSVLTRGNAILTYTLSVLACLTFLLF 187
           M+++L+R NA+L +TL V+A +T   F
Sbjct: 1   MHNLLSRANALLAFTLWVMAAVTAACF 27


>AC084161-2|AAK29732.3|  782|Caenorhabditis elegans Hypothetical
           protein Y92H12A.4 protein.
          Length = 782

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 28/88 (31%), Positives = 44/88 (50%)
 Frame = +1

Query: 328 LSNLFNWNVKQLFLYLTAEYITPSNELNXVVLWDKIILXGENAVLXFKNMNTKYYFWDDG 507
           +SNL  +  KQ  L    +++  S EL   V +  ++  G+N +  F  +N K++  +DG
Sbjct: 262 VSNLEEYMTKQNVL----QHVRISIELERKVQF-MVVNGGKNLLTYFTWLNNKFFRANDG 316

Query: 508 NGLKGHSNVTLTLSWNIIPNAGLLPNIQ 591
             L+    V   LS N+ P A  LPN Q
Sbjct: 317 PALRAEC-VRYVLSMNLDP-AKALPNAQ 342


>AF016653-2|AAC48225.2|  914|Caenorhabditis elegans Patched related
           family protein 3 protein.
          Length = 914

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 546 IMEYYSQCWLVTQHPG 593
           I+ YYS CW++ ++PG
Sbjct: 553 IIPYYSACWVLVENPG 568


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,921,521
Number of Sequences: 27780
Number of extensions: 241081
Number of successful extensions: 595
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)