Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_E23
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.6  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   7.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -2

Query: 246 YFNCIHLGPSSVVHSAGLIKNSKKVRHAST--LSVYVSIAF 130
           YFNCI    +S V S  LI N    R+A T  +S +V + F
Sbjct: 297 YFNCIMFMVASSVVSTILILNYHH-RNADTHEMSEWVKVVF 336


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 505 GNGLKGHSNVTLTLSWNIIPNAGLLPNIQALGQ 603
           GN +K ++   L +  NI+   G   N+Q  GQ
Sbjct: 347 GNHVKLYTKQGLNVLGNIVQGNGDSVNVQLYGQ 379


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -2

Query: 261 YVFNXYFNCIHLGPSSVVHSAGLIKNSKKVRHAST 157
           Y F   F     GP    + AGL+    ++ HA T
Sbjct: 378 YWFTVEFGLCKEGPDVKAYGAGLLSAYGELLHALT 412


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 505 GNGLKGHSNVTLTLSWNIIPNAGLLPNIQALGQ 603
           GN +K ++   L +  NI+   G   N+Q  GQ
Sbjct: 347 GNHVKLYTKQGLNVLGNIVQGNGDSVNVQLYGQ 379


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,350
Number of Sequences: 438
Number of extensions: 3102
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)