Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_E23
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05230.1 68416.m00571 signal peptidase subunit family protein...    92   2e-19
At5g27430.1 68418.m03274 signal peptidase subunit family protein...    85   4e-17
At2g32770.3 68415.m04011 purple acid phosphatase (PAP13) identic...    30   1.1  
At2g32770.1 68415.m04010 purple acid phosphatase (PAP13) identic...    30   1.1  
At5g62620.1 68418.m07859 galactosyltransferase family protein co...    27   7.9  

>At3g05230.1 68416.m00571 signal peptidase subunit family protein
           contains Pfam profile:  PF04573 signal peptidase subunit
          Length = 167

 Score = 92.3 bits (219), Expect = 2e-19
 Identities = 45/116 (38%), Positives = 66/116 (56%)
 Frame = +1

Query: 226 QMNTVKVXVKNVPDYGASXERNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNE 405
           Q  + ++ + N+  +      ND   LT D+  DL +LF WN KQ+F+++ AEY TP N 
Sbjct: 35  QNPSAEIQILNINRFKKQSHGNDEVSLTLDISADLQSLFTWNTKQVFVFVAAEYETPKNS 94

Query: 406 LNXVVLWDKIILXGENAVLXFKNMNTKYYFWDDGNGLKGHSNVTLTLSWNIIPNAG 573
           LN V LWD II   E+A    + ++ KY F D G  L+G  +  LTL W+++P  G
Sbjct: 95  LNQVSLWDAIIPAKEHAKFRIQ-VSNKYRFIDQGQNLRG-KDFNLTLHWHVMPKTG 148


>At5g27430.1 68418.m03274 signal peptidase subunit family protein
           contains Pfam profile:  PF04573 signal peptidase subunit
          Length = 167

 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 43/116 (37%), Positives = 65/116 (56%)
 Frame = +1

Query: 226 QMNTVKVXVKNVPDYGASXERNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNE 405
           Q  + ++ + N+  +      ND   LT ++  DL +LF WN KQ+F ++ AEY T  N 
Sbjct: 35  QNPSAQIQILNINWFQKQPHGNDEVSLTLNITADLQSLFTWNTKQVFAFVAAEYETSKNA 94

Query: 406 LNXVVLWDKIILXGENAVLXFKNMNTKYYFWDDGNGLKGHSNVTLTLSWNIIPNAG 573
           LN V LWD II   E+A    + ++ KY F D G+ L+G  +  LTL W+++P  G
Sbjct: 95  LNQVSLWDAIIPEKEHAKFWIQ-ISNKYRFIDQGHNLRG-KDFNLTLHWHVMPKTG 148


>At2g32770.3 68415.m04011 purple acid phosphatase (PAP13) identical
           to purple acid phosphatase (PAP13) [Arabidopsis
           thaliana] GI:20257489; contains Pfam profile PF00149:
           Ser/Thr protein phosphatase
          Length = 545

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 262 PDYGASXERNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYI 390
           P+Y A  E +  GF   ++K +   L++WN  Q   YL A+ I
Sbjct: 491 PEYSAYRE-SSFGFGILEVKNETHALWSWNRNQDLYYLAADVI 532


>At2g32770.1 68415.m04010 purple acid phosphatase (PAP13) identical
           to purple acid phosphatase (PAP13) [Arabidopsis
           thaliana] GI:20257489; contains Pfam profile PF00149:
           Ser/Thr protein phosphatase
          Length = 516

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 262 PDYGASXERNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYI 390
           P+Y A  E +  GF   ++K +   L++WN  Q   YL A+ I
Sbjct: 462 PEYSAYRE-SSFGFGILEVKNETHALWSWNRNQDLYYLAADVI 503


>At5g62620.1 68418.m07859 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 681

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 370 YLTAEYITPSNELNXVVLWDKIILXGE 450
           YLTA Y +P      + LWDK++L G+
Sbjct: 651 YLTAHYQSPRQ---MICLWDKLVLTGK 674


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,916,790
Number of Sequences: 28952
Number of extensions: 213135
Number of successful extensions: 428
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)