Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_E16
         (480 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C)            78   3e-15
At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B) RIBO...    78   3e-15
At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A)            78   3e-15
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    27   5.0  
At3g47500.1 68416.m05166 Dof-type zinc finger domain-containing ...    27   6.5  

>At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C) 
          Length = 62

 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 36/59 (61%), Positives = 43/59 (72%)
 Frame = +3

Query: 246 GKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRXIQYNRRFVNVVQTFGRRRGPNSN 422
           GKVHGSLARAGKV+GQTPKV          GRA + +Q+NRRFV  V  FG++RGPNS+
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60


>At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B)
           RIBOSOMAL PROTEIN S30 - Arabidopsis
           thaliana,PID:e1358183
          Length = 62

 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 36/59 (61%), Positives = 43/59 (72%)
 Frame = +3

Query: 246 GKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRXIQYNRRFVNVVQTFGRRRGPNSN 422
           GKVHGSLARAGKV+GQTPKV          GRA + +Q+NRRFV  V  FG++RGPNS+
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60


>At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A)
          Length = 62

 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 36/59 (61%), Positives = 43/59 (72%)
 Frame = +3

Query: 246 GKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRXIQYNRRFVNVVQTFGRRRGPNSN 422
           GKVHGSLARAGKV+GQTPKV          GRA + +Q+NRRFV  V  FG++RGPNS+
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60


>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
            contains Pfam PF02138: Beige/BEACH domain; contains Pfam
            PF00400: WD domain, G-beta repeat (3 copies)
          Length = 2946

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 45   HIRGQSTHVLDVNGQESIGQIKERIRTLAAVGD 143
            H+R QS      N   S   +K+R  TL A+G+
Sbjct: 1385 HLRSQSKQTCATNAVASPSPLKKRTSTLTAIGE 1417


>At3g47500.1 68416.m05166 Dof-type zinc finger domain-containing
           protein identical to H-protein promoter binding
           factor-2a GI:3386546 from [Arabidopsis thaliana]
          Length = 448

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 281 SQRTNPQSGKTTKKEXEDWPC*AXNSVQQKIC 376
           +Q+T P  GKT KK  +  PC    S++ K C
Sbjct: 93  NQQTTPD-GKTLKKPTKILPCPRCKSMETKFC 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,107,801
Number of Sequences: 28952
Number of extensions: 148299
Number of successful extensions: 368
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)