Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_E15
         (620 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    23   2.7  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   4.8  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   8.3  

>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 281 SKLYSLEILVWVKAVF 328
           + LYSL +L+W+   F
Sbjct: 248 NSLYSLHLLLWITVTF 263


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +3

Query: 369 IYHRCGICNKKY 404
           + H+C +C+KK+
Sbjct: 193 VLHQCPVCHKKF 204


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 323 LLLPTPESPMSTTLNK*SYSSSLVP 249
           LL+P P+   ST  +  +YS S  P
Sbjct: 198 LLVPIPQRTASTASSASNYSPSQSP 222


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,812
Number of Sequences: 336
Number of extensions: 2622
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)