Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_E15
         (620 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.           123   5e-30
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    60   7e-11
EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger pr...    26   0.84 

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score =  123 bits (296), Expect = 5e-30
 Identities = 55/113 (48%), Positives = 78/113 (69%)
 Frame = +1

Query: 280 FKVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIXVDGKTIKAQIWDTAGQE 459
           FK+VL+G+S VGKSSL+ RF + +F+   +STIG  F T+++ +D  T+K +IWDTAGQE
Sbjct: 25  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTLCIDDTTVKFEIWDTAGQE 84

Query: 460 RYRAITSAYYRGAVGALLVYDIAKHLSYXNVXRWLRELRDHADXNILIMLVGN 618
           RY ++   YYRGA  A++VYDI    S+     W++EL+  A  NI+I L GN
Sbjct: 85  RYHSLAPMYYRGAQAAIVVYDIQNSDSFARAKTWVKELQRQASPNIVIALAGN 137


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 59.7 bits (138), Expect = 7e-11
 Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
 Frame = +1

Query: 283 KVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIXVDGKTIKAQIWDTAGQER 462
           K V++GD  VGK+ +L  +T + F  E   T    ++   + VDG  +   +WDTAGQE 
Sbjct: 8   KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTSFDNYSAPMV-VDGVQVSLGLWDTAGQED 66

Query: 463 YRAITSAYYRGAVGALLVYDIAKHLSYXNV-XRWLRELRDHADXNILIMLVG 615
           Y  +    Y      L+ Y +A   S+ NV  +W  E++ H   +  I+LVG
Sbjct: 67  YDRLRPLSYPQTDVFLICYSVASPSSFENVTSKWYPEIKHHC-PDAPIILVG 117


>EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger
           protein.
          Length = 993

 Score = 26.2 bits (55), Expect = 0.84
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 428 FMVLPSTXILLVANSTPMVDLDSKLNSFLVKRDRRLL 318
           F +L    +L++  + P+V  D  LN F +  D   L
Sbjct: 493 FHLLAGQPLLIIGTTGPLVLFDEALNQFCISNDFNFL 529


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 553,074
Number of Sequences: 2352
Number of extensions: 9357
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 60214320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)