Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_E15
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.4  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   4.2  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   4.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.7  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 268 YDYLFKVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVE 387
           ++Y+ KV+ I  S     +LL RF     NLE    I V+
Sbjct: 165 FNYM-KVIFIHSSDTDGRALLGRFQTTSQNLEDDVEIKVQ 203


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 151 IFVSNIIFIYGHLDVSKLTD 210
           IF+  IIFIY +  ++++TD
Sbjct: 13  IFLILIIFIYSNETIAQVTD 32


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 151 IFVSNIIFIYGHLDVSKLTD 210
           IF+  IIFIY +  ++++TD
Sbjct: 13  IFLILIIFIYSNETIAQVTD 32


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/18 (38%), Positives = 8/18 (44%)
 Frame = +3

Query: 423 HKSSDMGHGRAGAVPRHH 476
           H +   GH    A P HH
Sbjct: 416 HHTMGHGHSHIHATPHHH 433


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,621
Number of Sequences: 438
Number of extensions: 2744
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)