Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_E12
         (356 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B) simi...    98   1e-21
At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almo...    97   3e-21
At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C) simi...    94   3e-20
At2g05330.1 68415.m00561 speckle-type POZ protein-related contai...    29   0.91 
At5g16940.1 68418.m01985 expressed protein contains Pfam profile...    28   1.6  
At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transport...    25   2.4  
At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ...    26   6.4  
At5g18830.1 68418.m02237 squamosa promoter-binding protein-like ...    26   6.4  
At1g31930.2 68414.m03924 extra-large guanine nucleotide binding ...    26   6.4  
At1g31930.1 68414.m03923 extra-large guanine nucleotide binding ...    26   6.4  
At3g51710.1 68416.m05670 curculin-like (mannose-binding) lectin ...    26   8.5  
At3g11540.2 68416.m01408 gibberellin signal transduction protein...    26   8.5  

>At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B) similar
           to SP:Q43292 from [Arabidopsis thaliana]
          Length = 95

 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 48/94 (51%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
 Frame = +3

Query: 36  MTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKLRSYHWSVXAXXXXXXX 215
           MTKGT SFGKRRNK+HTLC RCG  S+HIQKS+C+ C YPAA+ R+Y+WSV A       
Sbjct: 1   MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 216 XXXMRHLKIVXXXXXXXXXXXXPTPP-NKAVXSS 314
              MR+L+ V               P NK V SS
Sbjct: 61  TGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASS 94


>At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almost
           identical to GB:Q43292
          Length = 95

 Score = 97.1 bits (231), Expect = 3e-21
 Identities = 47/94 (50%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
 Frame = +3

Query: 36  MTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKLRSYHWSVXAXXXXXXX 215
           M KGT SFGKRRNK+HTLC RCG  S+HIQKS+C+ C YPAA+ R+Y+WSV A       
Sbjct: 1   MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 216 XXXMRHLK-IVXXXXXXXXXXXXPTPPNKAVXSS 314
              MR+L+ +              TP NKA  SS
Sbjct: 61  TGRMRYLRNVPRRFKTCFREGTQATPRNKAAASS 94


>At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C) similar
           to ribosomal protein L37 GB:BAA04888 from [Homo sapiens]
          Length = 95

 Score = 93.9 bits (223), Expect = 3e-20
 Identities = 41/70 (58%), Positives = 50/70 (71%)
 Frame = +3

Query: 36  MTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKLRSYHWSVXAXXXXXXX 215
           M KGT SFGKRRNK+HTLC RCG  S+HIQKS+C+ C YPAA+ R+Y+WSV A       
Sbjct: 1   MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 216 XXXMRHLKIV 245
              MR+L+ V
Sbjct: 61  TGRMRYLRNV 70


>At2g05330.1 68415.m00561 speckle-type POZ protein-related contains
           Pfam PF00651 : BTB/POZ domain
          Length = 215

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +3

Query: 84  TLCRRCGXSSYHIQK-SKCAQCGY 152
           T C RCG  +YH Q  + C  CG+
Sbjct: 186 TSCSRCGLITYHNQTGTSCCSCGF 209


>At5g16940.1 68418.m01985 expressed protein contains Pfam profile
           PF04828: Protein of unknown function (DUF636)
          Length = 135

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 48  TSSFGKRRNKTHTLCRRCGXSSYHIQKS 131
           T +FG    K HT C+ CG +S++I +S
Sbjct: 64  TYTFGTHTAK-HTFCKVCGITSFYIPRS 90


>At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transporter,
            putative similar to multidrug-resistant protein CjMDR1
            GI:14715462 from [Coptis japonica]; contains Pfam
            profiles PF00005: ABC transporter, PF00664: ABC
            transporter transmembrane region
          Length = 1292

 Score = 25.4 bits (53), Expect(2) = 2.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 97   DVVXRHITFKNQNAPNVDILQ 159
            D+  RHI+FK  + P+V I Q
Sbjct: 1047 DIELRHISFKYPSRPDVQIFQ 1067



 Score = 20.6 bits (41), Expect(2) = 2.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 145  VDILQQNYDPTTGQ 186
            + +LQ+ YDP +GQ
Sbjct: 1093 IALLQRFYDPDSGQ 1106


>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
           (SPL7) identical to squamosa promoter binding
           protein-like 7 [Arabidopsis thaliana] GI:5931635;
           contains Pfam profile PF03110: SBP domain
          Length = 775

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = +3

Query: 63  KRRNKTHTLCRRCGXSSYHI----QKSKCAQCG 149
           K  +K H +C RC  +S+ +     K  C QCG
Sbjct: 151 KGYHKRHRVCLRCATASFVVLDGENKRYCQQCG 183


>At5g18830.1 68418.m02237 squamosa promoter-binding protein-like 7
           (SPL7) identical to squamosa promoter binding
           protein-like 7 [Arabidopsis thaliana] GI:5931635;
           contains Pfam profile PF03110: SBP domain
          Length = 801

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = +3

Query: 63  KRRNKTHTLCRRCGXSSYHI----QKSKCAQCG 149
           K  +K H +C RC  +S+ +     K  C QCG
Sbjct: 151 KGYHKRHRVCLRCATASFVVLDGENKRYCQQCG 183


>At1g31930.2 68414.m03924 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 12  SDCQRVTTMTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQC 146
           ++ +R   + + T+S  +R+ K  + C RCG + +   K  C  C
Sbjct: 150 AETERERKVHECTASTKRRKKKKKSECYRCGKAKWE-NKETCIVC 193


>At1g31930.1 68414.m03923 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 12  SDCQRVTTMTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQC 146
           ++ +R   + + T+S  +R+ K  + C RCG + +   K  C  C
Sbjct: 150 AETERERKVHECTASTKRRKKKKKSECYRCGKAKWE-NKETCIVC 193


>At3g51710.1 68416.m05670 curculin-like (mannose-binding) lectin
           family protein / PAN domain-containing protein contains
           Pfam profiles: PF01453 lectin (probable mannose
           binding), PF00024 PAN domain
          Length = 476

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
 Frame = +3

Query: 30  TTMTKGTSSFGKRRNKTHTLCRR---CGXSSYHIQKSKCAQCG 149
           T +  GT      + +   LC++   CG +SY + +  C   G
Sbjct: 345 TVLRNGTQVRNISKERCEELCKKDCECGAASYSVSEESCVMYG 387


>At3g11540.2 68416.m01408 gibberellin signal transduction protein
           (SPINDLY) identical to spindly GB:AAC49446 (GI:1589778)
           [Arabidopsis thaliana]; contains Pfam profile PF00515
           TPR Domain
          Length = 732

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
 Frame = +2

Query: 2   DISFGLSTSDNDDEGYLKLR*APK*DPYVMQKMWXIVISHSKIKMRPMWISCSKITIL-- 175
           D+   L  + N  EG  K   A K DP+     + + + +S++      +SC +   L  
Sbjct: 157 DLGTSLKLAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALER 216

Query: 176 PLVSEX*AQEDYWNWPHA--SFEDCQEALP 259
           P+ +E     D  N   A  ++E+C +  P
Sbjct: 217 PMYAEAYCNMDAGNITMAIDAYEECLKIDP 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,804,391
Number of Sequences: 28952
Number of extensions: 112436
Number of successful extensions: 204
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)