Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_E11
(381 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0343 - 20437780-20438009,20438576-20438666 29 1.2
01_05_0769 - 25042022-25042447,25042856-25043234,25043714-250437... 29 1.6
11_06_0691 - 26315738-26315848,26315939-26316163,26316249-263166... 28 2.2
07_03_1435 - 26532302-26533159,26533559-26534902,26535180-26535188 27 3.8
07_03_0248 + 15798650-15799075,15799143-15799619,15799713-15800948 27 3.8
03_06_0601 + 34991912-34992352,34993719-34994516 27 3.8
08_02_0604 - 19215017-19215101,19215870-19216021,19216591-192166... 27 5.0
04_04_0111 - 22842337-22842648,22843008-22843402,22843732-228440... 27 5.0
02_05_0979 + 33268294-33269595 27 6.6
01_03_0175 + 13450869-13451013,13451293-13451372,13451417-134522... 27 6.6
07_01_1132 + 10531922-10532136,10532307-10532433,10532945-105331... 26 8.7
01_05_0275 - 20300994-20301150,20301582-20301670,20302779-203029... 26 8.7
>05_04_0343 - 20437780-20438009,20438576-20438666
Length = 106
Score = 29.1 bits (62), Expect = 1.2
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 43 KNSNSQGSNTSAANAIALGAMTVVAVGTFLFTWWQEREVPPPH 171
K + S+G + LG VV + FLF +WQ+++ H
Sbjct: 43 KKAQSKGHTGRTVLIVLLGIGAVVLLSFFLFKYWQKKKREEQH 85
>01_05_0769 -
25042022-25042447,25042856-25043234,25043714-25043763,
25044222-25044442,25045085-25045385
Length = 458
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 73 SAANAIALGAMTVVAVGTFLFTWWQEREVPPPHGAQG 183
+AA A A+ A+ +AV T + WW R + AQG
Sbjct: 14 AAAAAAAVAALLWLAVSTLEWAWWTPRRLERALRAQG 50
>11_06_0691 -
26315738-26315848,26315939-26316163,26316249-26316602,
26316681-26316795,26316882-26316925,26317026-26317122,
26317243-26317406,26317499-26317726,26317903-26318222,
26320028-26320136
Length = 588
Score = 28.3 bits (60), Expect = 2.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -2
Query: 173 PCGGGTSLSCHQVKRNVPTATTVIAPSAIALAADVLLPCELEFLVIA 33
P GGG SL C+Q+ + TV+ ++L D ++ +F + A
Sbjct: 209 PTGGGKSL-CYQLPATLHPGVTVVVCPLLSLIEDQIVALNFKFAIPA 254
>07_03_1435 - 26532302-26533159,26533559-26534902,26535180-26535188
Length = 736
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 131 RNVPTATTVIAPSAIALAADVLLPCELEF 45
R P+ TV +P + A+ +LP E+EF
Sbjct: 591 RTTPSRATVQSPFFLVYGAEAMLPSEVEF 619
>07_03_0248 + 15798650-15799075,15799143-15799619,15799713-15800948
Length = 712
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 177 SSVRWGNLPFLPPSKEKCSDRHNRHRA*CYSI 82
S +RW FLPPS + SD H + RA +++
Sbjct: 498 SRLRWACDRFLPPSTQLQSDTHWKTRAHTHTV 529
>03_06_0601 + 34991912-34992352,34993719-34994516
Length = 412
Score = 27.5 bits (58), Expect = 3.8
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +1
Query: 85 AIALGAMTVVAVGTFLFTWWQEREVPPPHGAQGANRR 195
A A A T A T TWW E P A A+RR
Sbjct: 282 AAASAAGTAAAADTAAQTWWSEYWARHPEMAAAASRR 318
>08_02_0604 -
19215017-19215101,19215870-19216021,19216591-19216614,
19216656-19216884,19217061-19217177,19219249-19219311,
19219887-19220125
Length = 302
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +1
Query: 82 NAIALGAM---TVVAVGTFLFTWWQEREVP 162
N I +G++ +V VG +LF W + RE+P
Sbjct: 269 NDITIGSLLGTALVIVGLYLFLWAKAREIP 298
>04_04_0111 -
22842337-22842648,22843008-22843402,22843732-22844073,
22844154-22844282,22844402-22844514,22844596-22844667,
22844783-22844859,22844978-22845052,22845058-22845121,
22845332-22845403,22845496-22845628,22846859-22846961
Length = 628
Score = 27.1 bits (57), Expect = 5.0
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 55 SQG-SNTSA-ANAIALGAMTVVAVGTFLFTWWQEREVPPPH 171
SQG S T A A +A A + AV F WW+ R+ P H
Sbjct: 235 SQGDSKTGAIAGGVAAAAALLFAVPAIGFAWWRRRK-PEEH 274
>02_05_0979 + 33268294-33269595
Length = 433
Score = 26.6 bits (56), Expect = 6.6
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -1
Query: 168 RWGNLPFLPPSKEKCSDRHNRHRA*CYSISSGCVAALRIRILGHRKMAIYLW 13
+W +L PP +E + RH H S C + ++I GH YLW
Sbjct: 94 QWQHLIPRPPVEEIMTARHLPHGTIFPLASKSCHGLVLLKITGHH--THYLW 143
>01_03_0175 +
13450869-13451013,13451293-13451372,13451417-13452240,
13452287-13452638
Length = 466
Score = 26.6 bits (56), Expect = 6.6
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 110 LWRSEHFSLLGGKKGRFPHRTELKARIGEXSXXT 211
LW EHF L G + PHR + IG S T
Sbjct: 67 LWSIEHFGLRTGLRRPLPHRHLRVSDIGIDSTST 100
>07_01_1132 +
10531922-10532136,10532307-10532433,10532945-10533100,
10533755-10533847,10534010-10534090,10534205-10534276,
10534608-10534676,10534764-10534874,10535039-10535089
Length = 324
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 90 STRRDDGCGGRNISLYLVARKGGSPTARSSRR 185
S RR G G + + AR+GG AR+ RR
Sbjct: 13 SARRSRGAGREALRQRMEARRGGLAGARAGRR 44
>01_05_0275 -
20300994-20301150,20301582-20301670,20302779-20302937,
20303015-20303255,20303453-20303569,20304804-20304866,
20305009-20305118,20306418-20306495
Length = 337
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 84 CYSTRRDDGCGGRNISLYLVARKGGSPTARS 176
C++ R DGCG SL R+GG +RS
Sbjct: 256 CHNKRSADGCGPVYCSLGEEDRRGGYQQSRS 286
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,410,891
Number of Sequences: 37544
Number of extensions: 155723
Number of successful extensions: 416
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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