Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_E11
         (381 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21)                   28   2.2  
SB_55589| Best HMM Match : adh_short (HMM E-Value=0.14)                27   5.2  
SB_18476| Best HMM Match : EF1_GNE (HMM E-Value=3.4)                   27   5.2  

>SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21)
          Length = 1332

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 107  RLWRSEHFSLLGGKKGRFPHRTELKARIGEXSXXT*CSGKIIL 235
            +LW    F + G KKG FP+  ++  R+ +      CS  +IL
Sbjct: 1080 QLWLLSRFKINGTKKGCFPYNKQIFWRLNKVKKKE-CSHTVIL 1121


>SB_55589| Best HMM Match : adh_short (HMM E-Value=0.14)
          Length = 337

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 201 LXSPIRALSSVRWGNLPFLPPSKEKCSDRHNRH 103
           L   + A+  V W +L FLPP++ +  D HN++
Sbjct: 130 LAGAVIAVLFVAWLSLKFLPPTR-RVGDYHNKY 161


>SB_18476| Best HMM Match : EF1_GNE (HMM E-Value=3.4)
          Length = 277

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 28  HFAMTKNSNSQGSNTSAANAIALGAMT 108
           H   TK SNS  S T+A NA+   A+T
Sbjct: 249 HRDTTKGSNSSLSKTTALNAVKFAAIT 275


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,419,339
Number of Sequences: 59808
Number of extensions: 159883
Number of successful extensions: 344
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)