Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_E10
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   116   2e-27

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  116 bits (280), Expect = 2e-27
 Identities = 68/183 (37%), Positives = 88/183 (48%), Gaps = 2/183 (1%)
 Frame = +1

Query: 112 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPDIAFPRI 285
           EL  PGS  L G+ Q+YN  ++AH                  N LVPL++ APD+A+PR+
Sbjct: 45  ELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVAYPRV 104

Query: 286 NNIRFXXXXXXXXXXXXRXIVXNGAGTG*TVYPPLSSNIAHXGRSVXLAIFSLHLAGISS 465
           NN  F              +   G G G TVYPPLSS  +H G ++ LAI SL L GISS
Sbjct: 105 NNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISS 164

Query: 466 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 645
                              S  Q+PLF  A+ IT+          AG + +L +DRNLNT
Sbjct: 165 TLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLLLTLPVLAGGLFMLFSDRNLNT 224

Query: 646 SFF 654
           SF+
Sbjct: 225 SFY 227



 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 12 IYSTNHKDIGTLYFIF 59
          I+STN KDI  LY +F
Sbjct: 12 IFSTNAKDIAILYLLF 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,823,179
Number of Sequences: 5004
Number of extensions: 26167
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)