Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_E09
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.06c |snx3|grd19|sorting nexin Snx3|Schizosaccharomyces p...   104   1e-23
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    56   4e-09
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    49   6e-07
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    39   5e-04
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    34   0.019
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    32   0.076
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    27   1.6  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    27   1.6  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   5.0  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   5.0  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    26   5.0  

>SPBC887.06c |snx3|grd19|sorting nexin Snx3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score =  104 bits (249), Expect = 1e-23
 Identities = 59/142 (41%), Positives = 83/142 (58%), Gaps = 2/142 (1%)
 Frame = +2

Query: 128 RLNVKKQTLDDAYAAPANFLEIDVLNPVTTMGVGKKRYTDYEVRMRTNLPVFKVKDSSVR 307
           R  +++QT    Y  P N LEIDV+NP  T G+G+  +T YE+  RTN+P F++ +SSVR
Sbjct: 6   RPEIRQQTTQQMYDVPENILEIDVINP-QTHGIGRNMFTTYEIVCRTNMPYFRLHNSSVR 64

Query: 308 RRYXDFEWLXNELXRDS-KIVVPPLPGKALKRQLPFRXXXXXXXXXXXXXXXKGLEVFIN 484
           RRY +FE   + L R+S ++ +PPLPGK   ++  FR               +GLE F+ 
Sbjct: 65  RRYSEFEKFHDMLERESGRVSIPPLPGKIFTQR--FR-------DDVIEERRQGLENFLR 115

Query: 485 KIAGHPL-AXNERCLHMFLQEP 547
            +AGHPL   + R L  FLQ P
Sbjct: 116 LVAGHPLIQTHSRVLSSFLQSP 137


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 56.0 bits (129), Expect = 4e-09
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
 Frame = +2

Query: 239 YTDYEVRMRTNLPVFKVKDSSVRRRYXDFEWLXNELXRD-SKIVVPPLPGKALKRQLPFR 415
           +  YE+   ++LPVF+ K  SVRRRY DFE L N L  D +   +PPLP K         
Sbjct: 20  FVSYEIETESDLPVFEDKKFSVRRRYKDFEMLHNILSHDYNGYAIPPLPRKYTVSSF--- 76

Query: 416 XXXXXXXXXXXXXXXKGLEVFINKIAGHPLAXNERCLHMFLQ 541
                          + L+ F+++ + HP+  N   ++ FL+
Sbjct: 77  -SGGSLSPIFIARRMQSLQTFLDRCSTHPVISNSMHMYQFLE 117


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 48.8 bits (111), Expect = 6e-07
 Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 4/150 (2%)
 Frame = +2

Query: 152 LDDAYAAPANFLEIDVLNPVTTMGVGKKRYTDYEVRMRTNLPVFKVKDSSVRRRYXDFEW 331
           LD+      +FL+  V  P   +   +  +  Y +  +TNL +F   +  VRRR+ DF  
Sbjct: 7   LDEPSTNSTHFLQCLVTEPRKELQGSRDTHVSYLIITKTNLSIFTRAECKVRRRFSDFVK 66

Query: 332 LXNELXR-DSKIVVPPLPGKALKRQLPFRXXXXXXXXXXXXXXXKGLEVFINKIAGHPLA 508
           L   L R +   VVPPLP    K +L +                K L  +I + A HP+ 
Sbjct: 67  LQEILSRMNEDCVVPPLPA---KHKLEY-IKGGRFSDNFINRRAKLLNRYITRCALHPVL 122

Query: 509 XNERCLHMFLQEPTID---RSYVPGKIRNT 589
                   FL+ P  +   R ++  K+ NT
Sbjct: 123 HQSPHFIAFLENPNWNNYVRFFIQPKLNNT 152


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
 Frame = +2

Query: 191 IDVLNPVTTMGVGKKRYTDYEVRMRT---NLPVFKVKDSSVRRRYXDFEWLXNELXRDSK 361
           I V +P T   + K  +T Y V  R    N P   V + +V+RRY DF +L   L  +  
Sbjct: 204 IQVHDPHTVKEITKS-HTVYSVSTRLEEHNQP--SVSNVTVQRRYNDFAFLYQLLSNNHP 260

Query: 362 -IVVPPLPGKALKRQLPFRXXXXXXXXXXXXXXXKGLEVFINKIAGHPLAXNERCLHMFL 538
             ++PP+P K +  +                     LEV + KI+ HP+  ++    +FL
Sbjct: 261 GCIIPPIPEKQVVGRFD---------DEFIEQRRAALEVMLRKISAHPVLRDDYSFKLFL 311

Query: 539 QEPTID 556
           +  T D
Sbjct: 312 EAETFD 317


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 33.9 bits (74), Expect = 0.019
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
 Frame = +2

Query: 302 VRRRYXDFEWLXNELXRDSKIV-VPPLPGKALKRQLPFRXXXXXXXXXXXXXXXKGLEVF 478
           V RRY DF WL + L +      VP +P K    +                    GL  F
Sbjct: 317 VLRRYSDFFWLHSYLMKKYPFRRVPLIPLKKFHSKC-------FNSKQFFRTPPPGLSDF 369

Query: 479 INKIAGHPLAXNERCLHMFLQEPTIDRSY 565
           +N ++ HP+  N+  + +F  EP + +++
Sbjct: 370 VNDLSHHPIFSNDEVVRVFFTEPNVFKNW 398


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 31.9 bits (69), Expect = 0.076
 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
 Frame = +2

Query: 299 SVRRRYXDFEWLXNELXRD-SKIVVPPLPGKALKRQLPFRXXXXXXXXXXXXXXXKGLEV 475
           SV RRY DFE L   + R     +VPP+PGK                        + LE+
Sbjct: 51  SVWRRYSDFESLVKLMRRQYPAAIVPPIPGKQSLLSYAKHPRKAKSDAEFLNFRSRMLEL 110

Query: 476 FINKIAGHPLAXNERCLHMFL 538
           F+ +   HP   +      F+
Sbjct: 111 FLRQCLLHPCIRSNPIFDKFI 131


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 567 T*LLSMVGSCRNMWRQRSXCASGCPAILLMNTSRPF 460
           T L +  G C  MW++    ASG P  +L + +R F
Sbjct: 445 TVLANACGPCIGMWKRTDDIASGEPNAILTSFNRNF 480


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 131 LNVKKQTLDDAYAAPANFLEIDVLNPVTTMGVGKKRYTD 247
           LNV  +TL+  Y +PA+F  I     V+ + V  KR  D
Sbjct: 603 LNVDIKTLEPEYTSPASFFTILNRRRVSDISVNFKRSAD 641


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 198  TSISKKFAGAAYASSNVCFLTLR 130
            +SI ++F G+AY  + +CF  L+
Sbjct: 1203 SSIMREFGGSAYCLAELCFAILK 1225


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 475  HFQTFSAVLYKFLLKYTIIASERQLSLQSFAGQGRYDY 362
            HF+ +  V Y+ LL+YT  + ER   ++S+    R+ +
Sbjct: 932  HFEGYERVFYELLLRYT-YSDER---IESYPSDSRFHF 965


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 238 LHGLRSSYEDKPTRFQSERFERQTA 312
           L GL+  Y D  ++FQ E FE + A
Sbjct: 82  LRGLQKRYSDLESQFQKELFELEKA 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,087,503
Number of Sequences: 5004
Number of extensions: 36034
Number of successful extensions: 73
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)