Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_E09
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1430 - 37309737-37309946,37310049-37310100,37310348-373104...    77   9e-15
03_05_0065 + 20450814-20452748                                         29   3.9  

>01_06_1430 -
           37309737-37309946,37310049-37310100,37310348-37310427,
           37310538-37310606,37310710-37310843,37311173-37311332,
           37311483-37311554,37312113-37312246,37312386-37312521,
           37313273-37313416
          Length = 396

 Score = 77.4 bits (182), Expect = 9e-15
 Identities = 55/143 (38%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
 Frame = +2

Query: 161 AYAAPANFLEIDVLNPVTTMGVGKKRYTDYEVRMRTNLPVFKVKDSSVRRRYXDFEWLXN 340
           A AA   FL I V +PV  MG G + Y  Y V  +TNLP F+ ++  V RRY DFEWL +
Sbjct: 15  ASAAGVPFLSISVTDPVK-MGTGVQAYISYRVITKTNLPDFEGQEKIVIRRYSDFEWLHD 73

Query: 341 ELXRDSK-IVVPPLPGKALKRQLPFRXXXXXXXXXXXXXXXKGLEVFINKIAGHPLAXNE 517
            L    K I +PPLP K    +  F                + L++F+N+IA HP     
Sbjct: 74  RLAEKYKGIFIPPLPEKNAVEKFRF-------SKEFIELRRQALDLFVNRIASHPELKQS 126

Query: 518 RCLHMFLQ--EPTID--RSYVPG 574
             L +FLQ  E  +D  RSY  G
Sbjct: 127 GDLKIFLQADEEKMDRERSYETG 149


>03_05_0065 + 20450814-20452748
          Length = 644

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -2

Query: 589 CVPDLAGHVAPVDGGLLQEHVEAALVXRQRVPGYLVDEHFQTFSAVL 449
           C PD+  +   +DG   + H+E A     R+P Y +  +   ++ VL
Sbjct: 282 CTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVL 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,992,316
Number of Sequences: 37544
Number of extensions: 247149
Number of successful extensions: 468
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)