Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_E09
(617 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41682| Best HMM Match : PX (HMM E-Value=3.9) 101 6e-22
SB_22287| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_58679| Best HMM Match : PX (HMM E-Value=0.93) 43 2e-04
SB_18498| Best HMM Match : PX (HMM E-Value=1.6e-15) 41 7e-04
SB_35786| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.32
SB_31091| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.32
SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022) 29 2.3
SB_45198| Best HMM Match : PX (HMM E-Value=2.3e-10) 29 3.0
SB_34249| Best HMM Match : fn3 (HMM E-Value=0) 27 9.2
SB_32931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.1) 27 9.2
>SB_41682| Best HMM Match : PX (HMM E-Value=3.9)
Length = 96
Score = 101 bits (241), Expect = 6e-22
Identities = 46/72 (63%), Positives = 52/72 (72%)
Frame = +2
Query: 362 IVVPPLPGKALKRQLPFRXXXXXXXXXXXXXXXKGLEVFINKIAGHPLAXNERCLHMFLQ 541
IVVP LPGKALKR LPFR +GLE FIN++AGHPLA NE+CLHMFLQ
Sbjct: 1 IVVPALPGKALKRMLPFRGDDGIFEDEFIEDRRQGLEAFINRVAGHPLAQNEKCLHMFLQ 60
Query: 542 EPTIDRSYVPGK 577
EP ID++YVPGK
Sbjct: 61 EPMIDKNYVPGK 72
>SB_22287| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +2
Query: 170 APANFLEIDVLNPVTTMGVGKKRYTDYEVRMRTNLPVFKVKDSSVRRRYXDFEWLXNELX 349
AP + + + V +P T + + +YTDY++ + + + +VRRRY +F WL +L
Sbjct: 26 APCD-MHVTVRDPRTHVKDMRAQYTDYKIETEGSSDIMPLGACTVRRRYSEFTWLRKKLA 84
Query: 350 RD-SKIVVPPLPGK 388
+ +PPLPGK
Sbjct: 85 EEFPNASIPPLPGK 98
>SB_58679| Best HMM Match : PX (HMM E-Value=0.93)
Length = 231
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +2
Query: 191 IDVLNPVTTMGVGKKRYTDYEVRMRTNLPVFKVKDSSVRRRYXDFEWLXNEL 346
++V P + G K + DYE+ ++TN F K S++RRRY DF WL +L
Sbjct: 48 VEVNRPQIHICKGSK-FVDYEIYIQTNNMAFAKKLSNIRRRYSDFIWLRKQL 98
>SB_18498| Best HMM Match : PX (HMM E-Value=1.6e-15)
Length = 402
Score = 41.1 bits (92), Expect = 7e-04
Identities = 27/92 (29%), Positives = 40/92 (43%)
Frame = +2
Query: 266 TNLPVFKVKDSSVRRRYXDFEWLXNELXRDSKIVVPPLPGKALKRQLPFRXXXXXXXXXX 445
TN F S VRRR+ +FEWL N L ++ I + P P LP +
Sbjct: 37 TNSTCFVSSKSCVRRRFSEFEWLRNILEQNGSISLQPPP-------LPHKRLLGRFNQSF 89
Query: 446 XXXXXKGLEVFINKIAGHPLAXNERCLHMFLQ 541
+ L+ F+ ++ +E LH+FLQ
Sbjct: 90 IKERQQELQDFLVRVLAVTSYLSEAALHLFLQ 121
>SB_35786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 32.3 bits (70), Expect = 0.32
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 239 YTDYEVRMRTNLPVFKVKDSSVRRRYXDFEWLXNEL 346
Y Y V +T F + SVRRRY DF WL +
Sbjct: 91 YVSYNVITKTTRNQFDHPEYSVRRRYQDFLWLRQRM 126
>SB_31091| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 32.3 bits (70), Expect = 0.32
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +2
Query: 302 VRRRYXDFEWLXNEL-XRDSKIVVPPLPGKALKRQLPFRXXXXXXXXXXXXXXXKGLEVF 478
V RR+ F+WL N L + + I +PPLP K + + + LE +
Sbjct: 197 VSRRFKHFDWLYNRLVDKYTLIAIPPLPDKQITGRF---------GEDFVEKRREKLEKW 247
Query: 479 INKIAGHPLAXNERCLHMFLQEPTIDRSYVPGK 577
+ ++ HP+ ++ FL ++ + GK
Sbjct: 248 VGRLCQHPVLSKSPVVNHFLTCADSEKEWKAGK 280
>SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022)
Length = 664
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 356 SKIVVPPLPGKALKRQLP 409
SK ++PPLP K LKR LP
Sbjct: 506 SKRILPPLPSKDLKRSLP 523
>SB_45198| Best HMM Match : PX (HMM E-Value=2.3e-10)
Length = 408
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 308 RRYXDFEWLXNELXRD-SKIVVPPLPGKAL 394
RRY +FE L N L ++VPPLP K +
Sbjct: 71 RRYSEFELLRNYLVATYPAVIVPPLPEKRI 100
>SB_34249| Best HMM Match : fn3 (HMM E-Value=0)
Length = 2195
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 265 PHTNFVIRVAFFTNTHSGHWIKNVDF 188
P TN+ RVA FT G+W + V F
Sbjct: 651 PFTNYTARVAPFTLEGVGNWSETVSF 676
>SB_32931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.1)
Length = 815
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 503 LAXNERCLHMFLQEPTIDRSYVPGKIRN 586
LA L+MFL PT D++ P K RN
Sbjct: 751 LATMATALYMFLGVPTSDKTLSPAKSRN 778
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,020,889
Number of Sequences: 59808
Number of extensions: 277482
Number of successful extensions: 513
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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