Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_E09
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06140.1 68418.m00683 phox (PX) domain-containing protein sim...    69   3e-12
At5g58440.1 68418.m07319 phox (PX) domain-containing protein sim...    47   1e-05
At5g07120.1 68418.m00812 phox (PX) domain-containing protein sim...    45   5e-05
At5g59150.1 68418.m07413 Ras-related GTP-binding protein, putati...    29   2.5  
At3g46830.1 68416.m05083 Ras-related protein (RAB11A) / small GT...    28   5.7  
At1g72970.1 68414.m08439 glucose-methanol-choline (GMC) oxidored...    27   7.5  
At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) iden...    27   10.0 

>At5g06140.1 68418.m00683 phox (PX) domain-containing protein
           similar to SP|O60749 Sorting nexin 2 {Homo sapiens};
           contains Pfam profile PF00787: PX domain
          Length = 402

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 45/129 (34%), Positives = 63/129 (48%), Gaps = 3/129 (2%)
 Frame = +2

Query: 182 FLEIDVLNPVTTMGVGKKRYTDYEVRMRTNLPVFKVKDSSVRRRYXDFEWLXNELXRDSK 361
           +L + V +PV  +G G + Y  Y V  +TNLP ++  +  V RRY DF WL + L    K
Sbjct: 25  YLSVSVTDPVK-LGNGVQAYISYRVITKTNLPEYQGPEKIVIRRYSDFVWLRDRLFEKYK 83

Query: 362 -IVVPPLPGKALKRQLPFRXXXXXXXXXXXXXXXKGLEVFINKIAGHPLAXNERCLHMFL 538
            I +PPLP K+   +  F                  L++F+N+IA HP       L  FL
Sbjct: 84  GIFIPPLPEKSAVEKFRF-------SAEFIEMRRAALDIFVNRIALHPELQQSEDLRTFL 136

Query: 539 Q--EPTIDR 559
           Q  E T+DR
Sbjct: 137 QADEETMDR 145


>At5g58440.1 68418.m07319 phox (PX) domain-containing protein
           similar to SP|O60749 Sorting nexin 2 {Homo sapiens};
           contains Pfam profile PF00787: PX domain
          Length = 587

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 7/132 (5%)
 Frame = +2

Query: 167 AAPANFLEIDVLNP-----VTTMGVGKKRYTDYEVRMRTNLPVF-KVKDSSVRRRYXDFE 328
           ++ +++++I V NP     ++   VG   Y  Y++  RTNLP F    + SVRRR+ D  
Sbjct: 147 SSSSDYIKITVSNPQKEQEISNSIVGGNTYITYQITTRTNLPDFGGPSEFSVRRRFRDVV 206

Query: 329 WLXNELXRDSK-IVVPPLPGKALKRQLPFRXXXXXXXXXXXXXXXKGLEVFINKIAGHPL 505
            L + L    +   +PP P K++      +                 LE ++ +++ HP+
Sbjct: 207 TLADRLAETYRGFCIPPRPDKSVVESQVMQKQEFVEQRRV------ALEKYLRRLSAHPV 260

Query: 506 AXNERCLHMFLQ 541
             N   L +FLQ
Sbjct: 261 IRNSDELKVFLQ 272


>At5g07120.1 68418.m00812 phox (PX) domain-containing protein
           similar to SP|O60749 Sorting nexin 2 {Homo sapiens};
           contains Pfam profile PF00787: PX domain
          Length = 572

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 7/129 (5%)
 Frame = +2

Query: 176 ANFLEIDVLNP------VTTMGVGKKRYTDYEVRMRTNLPVFKVKDSSVRRRYXDFEWLX 337
           +++++I V NP        +M  G   Y  Y++  RTNL  +   + SVRRR+ D   L 
Sbjct: 139 SDYIKITVSNPQKEQEATNSMIPGGSTYITYQITTRTNLSDYGGSEFSVRRRFRDIVTLA 198

Query: 338 NELXRDSK-IVVPPLPGKALKRQLPFRXXXXXXXXXXXXXXXKGLEVFINKIAGHPLAXN 514
           + L    +   +PP P K++      +                 LE ++ ++  HP+  N
Sbjct: 199 DRLAESYRGFCIPPRPDKSIVESQVMQKQEFVEQRRV------ALEKYLRRLVAHPVIRN 252

Query: 515 ERCLHMFLQ 541
              L +FLQ
Sbjct: 253 SDELKVFLQ 261


>At5g59150.1 68418.m07413 Ras-related GTP-binding protein, putative
           similar to Ras-related protein Rab11C SP:Q40193 from
           [Lotus japonicus]
          Length = 217

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = -2

Query: 565 VAPVDGGLLQEHVEAALVXRQRVPGYLVDEHFQTFSAVLYKFLLKYTIIASERQLSLQSF 386
           VA  DG  L E    + +    +    V++ FQT  A +Y  + K  + A E   +  + 
Sbjct: 135 VAEEDGQTLAETEGLSFLETSALEATNVEKAFQTVLAEIYHIISKKALAAQEAAAANSAI 194

Query: 385 AGQG 374
            GQG
Sbjct: 195 PGQG 198


>At3g46830.1 68416.m05083 Ras-related protein (RAB11A) / small
           GTP-binding protein, putative identical to SP|Q96283
           Ras-related protein Rab11A {Arabidopsis thaliana};
           identical to cDNA Rab11 protein GI:2598228
          Length = 217

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = -2

Query: 565 VAPVDGGLLQEHVEAALVXRQRVPGYLVDEHFQTFSAVLYKFLLKYTIIASERQLSLQSF 386
           VA  DG  L E    + +    +    V++ FQT    +Y  + K  + A E   +  + 
Sbjct: 135 VAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQEAAAANSAI 194

Query: 385 AGQG 374
            GQG
Sbjct: 195 PGQG 198


>At1g72970.1 68414.m08439 glucose-methanol-choline (GMC)
           oxidoreductase family protein similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|P52707];
           contains Pfam profile PF00732 GMC oxidoreductase
          Length = 594

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 23/84 (27%), Positives = 33/84 (39%)
 Frame = -2

Query: 463 FSAVLYKFLLKYTIIASERQLSLQSFAGQGRYDYLAVPXQFIXEPLEVXIPPSDARIFHF 284
           F+   Y F+ K +  +S    S  S      YDY+ +       PL   +   +  +   
Sbjct: 32  FNPYRYTFIDKASTFSSSSSSSFSSNGQDSSYDYIVIGGGTAGCPLAATL-SQNFSVLVL 90

Query: 283 ENG*VCPHTNFVIRVAFFTNTHSG 212
           E G V P TN    V+F  N H G
Sbjct: 91  ERGGV-PFTN--ANVSFLRNFHIG 111


>At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5)
           identical to HAC5 (GI:21105780) [Arabidopsis thaliana];
           similar to CREB-binding protein GB:S39162 from [Homo
           sapiens]
          Length = 1670

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 595 QLCVPDLAGHVAPVDGGLLQEHVEAALVXRQRVP 494
           Q   PD  G+ A +  G+ Q H    L  + R+P
Sbjct: 756 QFAYPDTQGNPATISAGVSQAHFSMGLQEKDRLP 789


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,953,138
Number of Sequences: 28952
Number of extensions: 189843
Number of successful extensions: 365
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)