Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_E05
         (413 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2DI70 Cluster: Putative uncharacterized protein; n=1; ...    33   3.1  
UniRef50_A5KIQ4 Cluster: Putative uncharacterized protein; n=2; ...    32   5.3  
UniRef50_Q9L6G6 Cluster: Primase-helicase; n=5; Lactobacillus de...    31   7.1  
UniRef50_A7A2K1 Cluster: Putative uncharacterized protein; n=1; ...    31   7.1  

>UniRef50_A2DI70 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 289

 Score = 32.7 bits (71), Expect = 3.1
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
 Frame = -2

Query: 370 DPAQGSSYSGSGFNAHXICSHHTRVR**FCGPXFS*GNVIGIGP---LFTLRILASTXGS 200
           D   G  YS +GF  +  C H   +     G   S G V+ + P    F  +       +
Sbjct: 2   DTFAGYPYSFAGFIDYSNCYHPVAIPWLLVGIGVSIGTVVSVIPQLQKFVQKRSNYGMNT 61

Query: 199 LRHCCTIYSSSLHLIYYFCMH*RKFTTMV 113
           L  C   Y   ++ + YFC+H   F  +V
Sbjct: 62  LTICLISYGQIINFVNYFCLHSADFVGIV 90


>UniRef50_A5KIQ4 Cluster: Putative uncharacterized protein; n=2;
           Ruminococcus|Rep: Putative uncharacterized protein -
           Ruminococcus torques ATCC 27756
          Length = 288

 Score = 31.9 bits (69), Expect = 5.3
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +2

Query: 101 CSVFYHCGKFSSVHTEI 151
           C++F+H GK SSVH+EI
Sbjct: 148 CALFFHAGKLSSVHSEI 164


>UniRef50_Q9L6G6 Cluster: Primase-helicase; n=5; Lactobacillus
           delbrueckii|Rep: Primase-helicase - Lactobacillus
           delbrueckii subsp. bulgaricus
          Length = 688

 Score = 31.5 bits (68), Expect = 7.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 144 VCTDENLPQW*NTEHCGFHYFRILVLIMQMPVQMP 40
           +C D N PQ+ +   CG  Y R++V ++ M  Q P
Sbjct: 47  MCVDRNHPQYVHCFSCGVSYDRLIVGLLLMTAQRP 81


>UniRef50_A7A2K1 Cluster: Putative uncharacterized protein; n=1;
           Bifidobacterium adolescentis L2-32|Rep: Putative
           uncharacterized protein - Bifidobacterium adolescentis
           L2-32
          Length = 299

 Score = 31.5 bits (68), Expect = 7.1
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +2

Query: 113 YHCGKFSSVHTEIIDQ--MQAGGIDSAAMSETPXSGSEDSECEQ 238
           Y CG+F+ +HTE +D+  ++  G  SAA+S +   G+   E  Q
Sbjct: 179 YPCGRFTFLHTETLDRGVLRTLGTLSAALSASSNRGTRRPELAQ 222


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 330,213,265
Number of Sequences: 1657284
Number of extensions: 5030525
Number of successful extensions: 10882
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10872
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 19042509735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)