Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_E05
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    28   0.50 
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   2.7  

>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 28.3 bits (60), Expect = 0.50
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = -2

Query: 205 GSLRHCCTIYSSSLHLIYYF----CMH*RKFTTMVKHRTLRFSLLSNISINHADARADA 41
           G LR C + Y   LH IYYF      +  KF   +  +  R  L+ +IS+N+    + A
Sbjct: 29  GLLRICRSSYVGGLHAIYYFPKLNPRNYHKFVDTISRKPTR-KLVHHISLNNVSYASKA 86


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = -2

Query: 241 PLFTLRILASTXGSLRHC-CTIYSSSLHLIYYF---CMH 137
           P +++    S    L H  C+IYS +LH  ++F   C H
Sbjct: 34  PFYSILCFLSFFALLLHLPCSIYSHTLHFFHHFTIACYH 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,327,918
Number of Sequences: 5004
Number of extensions: 20082
Number of successful extensions: 34
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)