Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_E05
(413 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0385 - 2988117-2988429,2988566-2988887,2988977-2989118 28 2.6
11_01_0450 - 3487464-3487844,3487883-3488268,3488883-3489033,348... 28 3.4
04_04_1328 - 32682087-32682200,32682290-32682365,32682442-326826... 27 4.5
09_02_0097 - 4232707-4232991,4233672-4233913,4234253-4234427 27 5.9
07_03_0521 + 19016824-19017000,19017064-19017099,19017860-190186... 27 5.9
04_03_0541 - 16934460-16934573,16934663-16934738,16934815-169350... 27 5.9
04_04_0788 + 28064684-28066584,28066692-28066815,28066908-280672... 27 7.8
01_06_1351 - 36510599-36510712,36510802-36510877,36510954-365112... 27 7.8
>03_01_0385 - 2988117-2988429,2988566-2988887,2988977-2989118
Length = 258
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 191 MSETPXSGSEDSECEQGPDPDDVALTEXWATELLXDAGVVG 313
+S SGS S +GP+ D + L+ W AG+VG
Sbjct: 179 ISNVAGSGSIQSVWVKGPNTDRMPLSRNWGANWQSHAGLVG 219
>11_01_0450 - 3487464-3487844,3487883-3488268,3488883-3489033,
3489132-3491102,3492090-3492149,3492240-3492436,
3492678-3492963
Length = 1143
Score = 27.9 bits (59), Expect = 3.4
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +2
Query: 191 MSETPXSGSEDSECE---QGPDPDDVALTEXWATELLXDAGVVGANXVRV 331
+ + P S ED + QGP+ D A WA + L +G+N + V
Sbjct: 1093 LQQPPWSQEEDPKAHGARQGPEADPAAQFSLWAGDELRRESAIGSNGLVV 1142
>04_04_1328 -
32682087-32682200,32682290-32682365,32682442-32682698,
32682788-32682886,32682965-32683163,32683247-32683460,
32683615-32683683,32683772-32684096,32684211-32684381,
32684461-32684625,32684701-32684814,32685228-32685336,
32685403-32685464,32685726-32685797,32686401-32686436,
32686506-32686634
Length = 736
Score = 27.5 bits (58), Expect = 4.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 138 TDENLPQW*NTEHCGFHYFRILV 70
T EN+P+ N + CGF+ F +V
Sbjct: 664 TVENIPEQQNRDDCGFYVFNFMV 686
>09_02_0097 - 4232707-4232991,4233672-4233913,4234253-4234427
Length = 233
Score = 27.1 bits (57), Expect = 5.9
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 131 SSVHTEIIDQMQAGGIDSAAMSETPXSGSEDSECEQGPDPDDVALTEXWATE 286
S H E I +++ +S + SE S S DS E P+P + + E T+
Sbjct: 96 SFAHCETIIEIEDTHEESTSESEYATSISHDSNVESSPEPREPKVIELPKTD 147
>07_03_0521 +
19016824-19017000,19017064-19017099,19017860-19018624,
19018772-19018864,19018944-19019114,19019206-19019397,
19019443-19019530,19019617-19019685,19019841-19020054,
19020136-19020334,19020406-19020504,19020594-19020850,
19020927-19021002,19021091-19021204
Length = 849
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 132 ENLPQW*NTEHCGFHYFRILV 70
EN+P+ N + CGFH F +V
Sbjct: 779 ENIPKQQNGDDCGFHVFNNMV 799
>04_03_0541 -
16934460-16934573,16934663-16934738,16934815-16935071,
16935161-16935259,16935338-16935536,16935620-16935833,
16935988-16936056,16936144-16936468,16936583-16936753,
16936833-16936997,16937073-16937709,16937776-16937837,
16938098-16938169,16938689-16938724,16938794-16938922
Length = 874
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 138 TDENLPQW*NTEHCGFHYFRILV 70
T EN+P+ N + CGF+ F +V
Sbjct: 802 TVENIPEQQNGDDCGFYVFNFMV 824
>04_04_0788 +
28064684-28066584,28066692-28066815,28066908-28067285,
28067286-28067488,28067615-28067897
Length = 962
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 152 IDQMQAGGIDSAAMSETPXSGSEDSECEQGPDPD 253
+D G I S A ++ SGS D E +Q PD D
Sbjct: 1 MDPRGKGSITSHASDKSSRSGSFDFEHDQDPDRD 34
>01_06_1351 -
36510599-36510712,36510802-36510877,36510954-36511210,
36511300-36511398,36511477-36511675,36511759-36511972,
36512127-36512195,36512283-36512607,36512722-36512892,
36512972-36513136,36513212-36513848,36513915-36513976,
36514237-36514308,36514912-36514947,36515017-36515145
Length = 874
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 138 TDENLPQW*NTEHCGFHYFRILV 70
T EN+P+ N + CGF+ F +V
Sbjct: 802 TVENIPEQQNGDDCGFYVFNYMV 824
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,908,941
Number of Sequences: 37544
Number of extensions: 140945
Number of successful extensions: 285
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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