Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_E05
(413 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z84574-8|CAE54891.1| 921|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z84574-7|CAB06544.3| 928|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical pr... 27 7.1
AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear recep... 27 7.1
AL022593-4|CAE54889.1| 921|Caenorhabditis elegans Hypothetical ... 27 7.1
AL022593-3|CAA18635.3| 928|Caenorhabditis elegans Hypothetical ... 27 7.1
AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear recep... 27 7.1
AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear recep... 27 7.1
AF273817-1|AAG15166.1| 70|Caenorhabditis elegans nuclear recep... 27 7.1
AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormo... 27 7.1
AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormo... 27 7.1
AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormo... 27 7.1
AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormo... 27 7.1
U23528-4|ABC71848.1| 160|Caenorhabditis elegans Calsyntenin/alc... 26 9.4
U23528-3|AAK31388.1| 167|Caenorhabditis elegans Calsyntenin/alc... 26 9.4
U23528-2|AAK31387.1| 984|Caenorhabditis elegans Calsyntenin/alc... 26 9.4
AY091591-1|AAM00045.1| 984|Caenorhabditis elegans calsyntenin p... 26 9.4
AF273818-1|AAG15167.1| 68|Caenorhabditis elegans nuclear recep... 26 9.4
>Z84574-8|CAE54891.1| 921|Caenorhabditis elegans Hypothetical
protein F33E2.2b protein.
Length = 921
Score = 26.6 bits (56), Expect = 7.1
Identities = 9/38 (23%), Positives = 21/38 (55%)
Frame = +2
Query: 140 HTEIIDQMQAGGIDSAAMSETPXSGSEDSECEQGPDPD 253
H E++D+ A +D + ++ S S+D++ E + +
Sbjct: 788 HVELVDEENANDVDLTSSMDSRRSRSDDADVESSEEDE 825
>Z84574-7|CAB06544.3| 928|Caenorhabditis elegans Hypothetical
protein F33E2.2a protein.
Length = 928
Score = 26.6 bits (56), Expect = 7.1
Identities = 9/38 (23%), Positives = 21/38 (55%)
Frame = +2
Query: 140 HTEIIDQMQAGGIDSAAMSETPXSGSEDSECEQGPDPD 253
H E++D+ A +D + ++ S S+D++ E + +
Sbjct: 795 HVELVDEENANDVDLTSSMDSRRSRSDDADVESSEEDE 832
>Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical
protein C15C6.3 protein.
Length = 541
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2
Query: 367 PAQGSSYSGSGFNAHXICS 311
PA+G SYS S F+AH I S
Sbjct: 166 PARGISYSPSKFDAHEISS 184
>AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 618
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 176 IDSAAMSETPXSGSEDSECEQGPDPDDV 259
+D +++ +P G +DSE EQGP P V
Sbjct: 571 LDVESVNVSP-DGQKDSEAEQGPSPVSV 597
>AL022593-4|CAE54889.1| 921|Caenorhabditis elegans Hypothetical
protein F33E2.2b protein.
Length = 921
Score = 26.6 bits (56), Expect = 7.1
Identities = 9/38 (23%), Positives = 21/38 (55%)
Frame = +2
Query: 140 HTEIIDQMQAGGIDSAAMSETPXSGSEDSECEQGPDPD 253
H E++D+ A +D + ++ S S+D++ E + +
Sbjct: 788 HVELVDEENANDVDLTSSMDSRRSRSDDADVESSEEDE 825
>AL022593-3|CAA18635.3| 928|Caenorhabditis elegans Hypothetical
protein F33E2.2a protein.
Length = 928
Score = 26.6 bits (56), Expect = 7.1
Identities = 9/38 (23%), Positives = 21/38 (55%)
Frame = +2
Query: 140 HTEIIDQMQAGGIDSAAMSETPXSGSEDSECEQGPDPD 253
H E++D+ A +D + ++ S S+D++ E + +
Sbjct: 795 HVELVDEENANDVDLTSSMDSRRSRSDDADVESSEEDE 832
>AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 624
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 176 IDSAAMSETPXSGSEDSECEQGPDPDDV 259
+D +++ +P G +DSE EQGP P V
Sbjct: 575 LDVESVNVSP-DGQKDSEAEQGPSPVSV 601
>AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 619
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 176 IDSAAMSETPXSGSEDSECEQGPDPDDV 259
+D +++ +P G +DSE EQGP P V
Sbjct: 570 LDVESVNVSP-DGQKDSEAEQGPSPVSV 596
>AF273817-1|AAG15166.1| 70|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 70
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 176 IDSAAMSETPXSGSEDSECEQGPDPDDV 259
+D +++ +P G +DSE EQGP P V
Sbjct: 21 LDVESVNVSP-DGQKDSEAEQGPSPVSV 47
>AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform b protein.
Length = 526
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 176 IDSAAMSETPXSGSEDSECEQGPDPDDV 259
+D +++ +P G +DSE EQGP P V
Sbjct: 477 LDVESVNVSP-DGQKDSEAEQGPSPVSV 503
>AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform a protein.
Length = 577
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 176 IDSAAMSETPXSGSEDSECEQGPDPDDV 259
+D +++ +P G +DSE EQGP P V
Sbjct: 528 LDVESVNVSP-DGQKDSEAEQGPSPVSV 554
>AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform d protein.
Length = 659
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 176 IDSAAMSETPXSGSEDSECEQGPDPDDV 259
+D +++ +P G +DSE EQGP P V
Sbjct: 610 LDVESVNVSP-DGQKDSEAEQGPSPVSV 636
>AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform c protein.
Length = 733
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 176 IDSAAMSETPXSGSEDSECEQGPDPDDV 259
+D +++ +P G +DSE EQGP P V
Sbjct: 684 LDVESVNVSP-DGQKDSEAEQGPSPVSV 710
>U23528-4|ABC71848.1| 160|Caenorhabditis elegans
Calsyntenin/alcadein homolog protein1, isoform c
protein.
Length = 160
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 158 QMQAGGIDSAAMSETPXSGSEDSECEQGPDPDDVALTEXWATELL 292
+ G ID + E +SEC + DDV+ E TE+L
Sbjct: 86 EKNGGAIDEFSDEEEEEETDGESECSYRDEEDDVSEDEEDQTEVL 130
>U23528-3|AAK31388.1| 167|Caenorhabditis elegans
Calsyntenin/alcadein homolog protein1, isoform b
protein.
Length = 167
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 158 QMQAGGIDSAAMSETPXSGSEDSECEQGPDPDDVALTEXWATELL 292
+ G ID + E +SEC + DDV+ E TE+L
Sbjct: 93 EKNGGAIDEFSDEEEEEETDGESECSYRDEEDDVSEDEEDQTEVL 137
>U23528-2|AAK31387.1| 984|Caenorhabditis elegans Calsyntenin/alcadein
homolog protein1, isoform a protein.
Length = 984
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 158 QMQAGGIDSAAMSETPXSGSEDSECEQGPDPDDVALTEXWATELL 292
+ G ID + E +SEC + DDV+ E TE+L
Sbjct: 910 EKNGGAIDEFSDEEEEEETDGESECSYRDEEDDVSEDEEDQTEVL 954
>AY091591-1|AAM00045.1| 984|Caenorhabditis elegans calsyntenin
protein.
Length = 984
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 158 QMQAGGIDSAAMSETPXSGSEDSECEQGPDPDDVALTEXWATELL 292
+ G ID + E +SEC + DDV+ E TE+L
Sbjct: 910 EKNGGAIDEFSDEEEEEETDGESECSYRDEEDDVSEDEEDQTEVL 954
>AF273818-1|AAG15167.1| 68|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 68
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 176 IDSAAMSETPXSGSEDSECEQGPDPDDV 259
+D +++ +P G +DSE EQGP P V
Sbjct: 19 LDVESVNISP-DGQKDSEAEQGPSPVSV 45
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,603,275
Number of Sequences: 27780
Number of extensions: 121859
Number of successful extensions: 272
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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