Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_E05
         (413 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   1.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   5.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   5.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   9.6  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 130 FVSAYRNNRSDASW 171
           FVSAY  N+ D++W
Sbjct: 20  FVSAYNLNQEDSNW 33


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 238 LFTLRILASTXGSLRHCCTIY 176
           +FTL +L  T G +    T+Y
Sbjct: 525 IFTLAVLVGTAGIILQAPTLY 545


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 238 LFTLRILASTXGSLRHCCTIY 176
           +FTL +L  T G +    T+Y
Sbjct: 525 IFTLAVLVGTAGIILQAPTLY 545


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -2

Query: 238 LFTLRILASTXGSLRHCCTIYSSSL 164
           +FTL ++  T G +    T+Y   +
Sbjct: 520 IFTLAVVVGTAGIILQAPTLYDDRI 544


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,012
Number of Sequences: 438
Number of extensions: 1365
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)