Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_E04
(460 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0) 106 1e-23
SB_36666| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_39090| Best HMM Match : zf-piccolo (HMM E-Value=0.81) 28 4.3
SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_57833| Best HMM Match : RnaseH (HMM E-Value=0.18) 28 4.3
SB_4267| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003) 27 5.6
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_47533| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31) 27 7.5
SB_14764| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 27 7.5
SB_58773| Best HMM Match : DUF834 (HMM E-Value=0.83) 27 9.9
SB_50619| Best HMM Match : RnaseH (HMM E-Value=0.89) 27 9.9
SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91) 27 9.9
>SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)
Length = 168
Score = 106 bits (254), Expect = 1e-23
Identities = 53/85 (62%), Positives = 61/85 (71%), Gaps = 2/85 (2%)
Frame = +3
Query: 189 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK-FSAKDL-KDPAKRKK 362
P KV KRMGK + KRSK+KPFVKV NYNHLMPTRY+VD +K KD+ +DPA +KK
Sbjct: 50 PLKVTKRMGKKRTAKRSKVKPFVKVFNYNHLMPTRYSVDVPLDKQVVNKDVFRDPALKKK 109
Query: 363 LRFNTRVRFEXRYKSGKNKWFFQKL 437
+ E RYKSGKNKWFFQKL
Sbjct: 110 ALREVKSTLEERYKSGKNKWFFQKL 134
Score = 90.6 bits (215), Expect = 5e-19
Identities = 40/71 (56%), Positives = 53/71 (74%)
Frame = +2
Query: 41 MGKIMKPGKVVLVLSGRYAGRKAIVVXNYDEGTSDKPYGHAFVAGIDRYPRQSAQEDGKE 220
MGK +K GKVVLVL GRYAG+KA+++ NYD+G+SDKPYGHA VAG+ RYP + + GK+
Sbjct: 1 MGKFIKSGKVVLVLRGRYAGKKALIIKNYDDGSSDKPYGHALVAGVARYPLKVTKRMGKK 60
Query: 221 *NPQEVQDKAF 253
+ + K F
Sbjct: 61 RTAKRSKVKPF 71
>SB_36666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 28.3 bits (60), Expect = 3.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 279 SDYSLQPSRKALSWTSCG 226
S Y ++P K+L W SCG
Sbjct: 2 SSYRIKPKNKSLGWVSCG 19
>SB_39090| Best HMM Match : zf-piccolo (HMM E-Value=0.81)
Length = 245
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -1
Query: 388 KRTRVLKRSFLRFAGSFRSFALNFSKL 308
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 100 KNTKELQ-TFLGFASYYRSFVKNFSKV 125
>SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2028
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -1
Query: 388 KRTRVLKRSFLRFAGSFRSFALNFSKL 308
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 598 KNTKELQ-TFLGFASYYRSFVKNFSKV 623
>SB_57833| Best HMM Match : RnaseH (HMM E-Value=0.18)
Length = 366
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -1
Query: 388 KRTRVLKRSFLRFAGSFRSFALNFSKL 308
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 61 KNTKELQ-TFLGFASYYRSFVKNFSKV 86
>SB_4267| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -1
Query: 388 KRTRVLKRSFLRFAGSFRSFALNFSKL 308
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 61 KNTKELQ-TFLGFASYYRSFVENFSKV 86
>SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)
Length = 1205
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -1
Query: 388 KRTRVLKRSFLRFAGSFRSFALNFSKL 308
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 677 KNTKELQ-TFLGFASYYRSFVENFSKV 702
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 27.5 bits (58), Expect = 5.6
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Frame = +3
Query: 123 ITTKVPPTSRTGMLSSLVSTGTPGKVHKRMG-KNKIHKRSKIK-PFVKVVNYNHLMP-TR 293
++ VPPT+ +L G V RMG K+ + K+ P + +++Y P R
Sbjct: 1284 VSEPVPPTTIFSLLLDTDEKAFQGNVKTRMGLLTKLAEYFKVTIPDIHIISYKPEDPGIR 1343
Query: 294 YTVDFSFEKFSAKDLKDPAKRK 359
+T F F K PA K
Sbjct: 1344 FT--FGFSNVPTKPCDSPALAK 1363
>SB_47533| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 177 STGTPGKVHKRMGKNKIHKRSKIKPFVKVVNYNHL 281
STG PG HKR G + + P+++ V+Y H+
Sbjct: 142 STGNPGLEHKRSGHSLV-----FLPYMEGVSYRHV 171
>SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31)
Length = 870
Score = 27.1 bits (57), Expect = 7.5
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +3
Query: 288 TRYTVDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEXRYKSGKNKWFFQKLXF 443
T Y + F+ L D K LR NT Y S NKWF+QKL +
Sbjct: 806 TNYLIIILFDDVDPSTLDDETKLY-LRTNT-------YLSVSNKWFWQKLFY 849
>SB_14764| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 820
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 228 GFYSFPSSCALCRGYLSIPATKACPYGLSEVPSS 127
G+ PS+ GY +P+ K G EVPSS
Sbjct: 332 GYTGVPSNKKSGTGYTGVPSNKKPGTGYKEVPSS 365
>SB_58773| Best HMM Match : DUF834 (HMM E-Value=0.83)
Length = 248
Score = 26.6 bits (56), Expect = 9.9
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Frame = -2
Query: 219 SFPSSCALCRGYLSIPATKACPYGLSEVPSS*XLTTIALRPAYRPLKTSTTL-PGFIILP 43
SFPS+ A GY T A G P TT A YR T+T G+ P
Sbjct: 78 SFPSTTAHISGYKGTSTTTAYSSGYRGTP-----TTTAYSSGYRETSTTTAYSSGYRGTP 132
Query: 42 ILEGYS 25
YS
Sbjct: 133 TTTAYS 138
>SB_50619| Best HMM Match : RnaseH (HMM E-Value=0.89)
Length = 724
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 367 RSFLRFAGSFRSFALNFSKL 308
++FL FA +RSF NFSK+
Sbjct: 6 QTFLGFASYYRSFVKNFSKV 25
>SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 138 PPTSRTGMLSSLVSTGTPGKVHKRMG 215
PPT+ T +L+++ ++G PG MG
Sbjct: 460 PPTTMTTILTTIATSGPPGGAPSPMG 485
>SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91)
Length = 383
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +3
Query: 315 EKFSAKDLKDPAKRKKLRFNTRVRFEXR---YKSGKNKWFFQK 434
++ S D +D +KRK++RF FE YK+ FQK
Sbjct: 237 DETSGNDTEDESKRKRVRFAEGTNFENERQTYKTRVKNITFQK 279
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,719,569
Number of Sequences: 59808
Number of extensions: 266607
Number of successful extensions: 717
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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