Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_E02
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    31   0.13 
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    25   6.4  

>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 133 RNSDSIRX--YNNILLNTYNVTDLHASNVFF*LKLCNFYLVRDDGGNNFVSLKV 288
           RN++ +R   Y NI     N+ ++H SN+   LK  N+Y+ R  G   F  L V
Sbjct: 468 RNNNFVRFSPYANITSFRENMINVHLSNIQCDLKDVNYYIKRKQGFPTFTDLGV 521


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 87  YYYFVCSLLLISRW 128
           +YYF C+LL+I  W
Sbjct: 436 FYYFSCTLLVIGLW 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,232,543
Number of Sequences: 5004
Number of extensions: 40285
Number of successful extensions: 75
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)