Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_D24
         (497 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0507 + 3655570-3655573,3655648-3655832                           82   2e-16
04_04_0165 + 23247265-23247472,23248115-23248407,23249182-232492...    32   0.22 
02_02_0664 - 12747888-12747900,12748161-12748229,12748332-127483...    29   2.1  
11_06_0734 - 26774471-26774652,26775008-26775137,26775447-267755...    28   4.8  
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468...    27   6.3  
02_03_0102 - 15238808-15239437,15241609-15243264                       27   8.4  

>06_01_0507 + 3655570-3655573,3655648-3655832
          Length = 62

 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 38/59 (64%), Positives = 44/59 (74%)
 Frame = +3

Query: 258 GKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFGRRRGPNSN 434
           GKVHGSLARAGKV+GQTPKV          GRA +R+QYNRRFV  V  FG++RGPNS+
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60


>04_04_0165 +
           23247265-23247472,23248115-23248407,23249182-23249239,
           23249302-23250014
          Length = 423

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 98  PGVHWSDQGTHSYSCCSWR*RPYSIIMWS 184
           PG+HW++Q    YS CS    P  I MW+
Sbjct: 378 PGIHWNNQWMRGYSDCSHWCLPGPIDMWN 406


>02_02_0664 -
           12747888-12747900,12748161-12748229,12748332-12748395,
           12749540-12749558,12749777-12749843,12749934-12749953,
           12750079-12750248,12751646-12751823
          Length = 199

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 95  WPGVHWSDQGTHSY 136
           WPG+HWSD  T  Y
Sbjct: 53  WPGLHWSDSSTPLY 66


>11_06_0734 -
           26774471-26774652,26775008-26775137,26775447-26775596,
           26775685-26775918,26775990-26776161,26776285-26776506,
           26776604-26776770,26776880-26777018,26777342-26777693,
           26778175-26778370
          Length = 647

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 45  LCSCISEGNRHTSWTSTGQESIGQIKER 128
           + S   +G    SW STG E+IG  ++R
Sbjct: 114 MASAAGDGGSQQSWRSTGGENIGDREQR 141


>09_04_0190 -
           15443764-15443838,15445360-15445458,15446396-15446891,
           15449436-15449479,15449999-15450104,15450243-15450314,
           15450474-15450588,15451182-15451407
          Length = 410

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -2

Query: 205 RHESCKGAPHNDRVRSSSPTAARVRMRSLI*PMDSWPVD--VQDVCRLP 65
           RH   + APH +R R + P A+ +  R+L     SWP      D CR P
Sbjct: 207 RHPRRRLAPHANRRRPAPPPASPILHRAL-----SWPASPIYPDRCRRP 250


>02_03_0102 - 15238808-15239437,15241609-15243264
          Length = 761

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 34  RFYNYAVAYQRAIDTRPGRQLARSP 108
           R  +  VAYQRA+D R    LAR P
Sbjct: 54  RLLHECVAYQRALDARLDALLARRP 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,193,896
Number of Sequences: 37544
Number of extensions: 220800
Number of successful extensions: 566
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)