Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_D24
         (497 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)          100   6e-22
SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)               29   2.1  
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 28   3.7  
SB_28876| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   4.9  
SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)                       27   6.5  
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_20760| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)
          Length = 61

 Score =  100 bits (240), Expect = 6e-22
 Identities = 47/59 (79%), Positives = 50/59 (84%)
 Frame = +3

Query: 261 KVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFGRRRGPNSNS 437
           KVHGSLARAGKVK QTPKV+        TGRAKRR+QYNRRFVNVVQTFGRRRGPNSN+
Sbjct: 2   KVHGSLARAGKVKSQTPKVDAQEKKKKKTGRAKRRMQYNRRFVNVVQTFGRRRGPNSNA 60


>SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)
          Length = 1426

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 18  SGLVDKILQLCSCISEGNRHTSWTSTGQESIGQIKERIRTL 140
           S L+DK +++   I EGN+    TS G +  G I +++  L
Sbjct: 762 SQLMDKQIEVNDVIDEGNKFLDDTSIGDDERGDIHQKMMKL 802


>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1706

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 70   IDTRPGRQLARSPLVRSRNAFVLLLQLAMKTLLYHYVEPLYM 195
            + + PG  L  +PLV SR  F++  Q  +   LY Y + L++
Sbjct: 882  VTSLPGNGLLVTPLVSSRELFLVAPQKFLGNQLYSYRQKLHV 923


>SB_28876| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 356

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 4   FFLLAQAWLIRFYNYA-VAYQRAIDTRPGRQLARSPL 111
           +FL+A  W+I F+N + + Y   +D     QL  SPL
Sbjct: 147 YFLIAATWVIAFFNASPLLYTMTLDNNNLCQLDWSPL 183


>SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)
          Length = 1167

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 305 NPQSGKTTKKEEEDWP 352
           NP  GKT  +E++DWP
Sbjct: 384 NPPQGKTPIEEDDDWP 399


>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 190 KGAPHNDRVRSSSPTAARVRMRS 122
           +G+PH  R R+SSP  AR R  S
Sbjct: 729 RGSPHQPRGRASSPGGARGRAAS 751


>SB_20760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 230

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +2

Query: 38  FTTMQLHIRGQSTHVLDV---NWPGVHWSDQGTHSYSCCSWR*RPYSIIMWS 184
           + T QLH     T   D    N+  + WS    H+Y+  +W    Y+ I WS
Sbjct: 132 YVTTQLHPIRHDTVTPDTSRHNYTPISWSK---HNYTTITWSKHNYTTITWS 180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,254,853
Number of Sequences: 59808
Number of extensions: 255867
Number of successful extensions: 679
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)