Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_D24
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal prote...    87   7e-18
U80452-10|AAB37853.1|  214|Caenorhabditis elegans Hypothetical p...    29   2.5  

>U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 30 protein.
          Length = 130

 Score = 87.0 bits (206), Expect = 7e-18
 Identities = 41/63 (65%), Positives = 47/63 (74%)
 Frame = +3

Query: 249 LLGGKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFGRRRGPN 428
           LLGGKVHGSLARAGKV+ QTPKV+         GRA RR+QY RR+VNV    G++RGPN
Sbjct: 68  LLGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGRAFRRVQYTRRYVNVASGPGKKRGPN 127

Query: 429 SNS 437
           SNS
Sbjct: 128 SNS 130


>U80452-10|AAB37853.1|  214|Caenorhabditis elegans Hypothetical
           protein C16C8.11 protein.
          Length = 214

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +3

Query: 33  KILQLCSCISEGNRHTSWTSTGQESIGQIKERIRTLAAVGDEDLTLSLCGAPLH 194
           K++ LC  +S   R  S  +   ES+ Q+K +I     +      L L G PL+
Sbjct: 140 KVVDLCIAVSMPGRLFSIGANKMESVEQLKMKIECQTGIPRTKFWLRLHGKPLY 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,481,398
Number of Sequences: 27780
Number of extensions: 190688
Number of successful extensions: 416
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)