Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_D21
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067616-2|AAC19188.2|  551|Caenorhabditis elegans Deubiquitylat...    30   1.2  
Z82075-2|CAB60333.1|  328|Caenorhabditis elegans Hypothetical pr...    28   4.7  
DQ178242-1|ABA18181.1|  578|Caenorhabditis elegans Frizzled homo...    28   6.2  
AF016413-2|ABA54421.1|  578|Caenorhabditis elegans Caenorhabditi...    28   6.2  
AF016413-1|ABA54422.1|  550|Caenorhabditis elegans Caenorhabditi...    28   6.2  
AB026113-1|BAA84678.1|  550|Caenorhabditis elegans Cfz2 protein.       28   6.2  
Z74043-11|CAA98549.3|  303|Caenorhabditis elegans Hypothetical p...    27   8.2  

>AF067616-2|AAC19188.2|  551|Caenorhabditis elegans Deubiquitylating
           with usp/ubp andotu domains protein 2 protein.
          Length = 551

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
 Frame = +2

Query: 92  QIVFFKLDNIDKS*TITYYIIIDVHTSXIILNIYLFYSVTC*FCGAMNKYAVLFNLK--K 265
           ++V +K+  +D S  I      D+  + I+L  +L         G +N+   +  L   K
Sbjct: 67  RMVRYKIRFLDNSLNINQTQPCDIKNNNIVLRNFLKIVSCLQLGGHLNEPNEVMKLSTSK 126

Query: 266 ILQYRPVTTIINAEGKNVPKRKNFENRITLIGTDNSVSIIXLKNA 400
           +LQYR     I+    N  +    E  +TLIG  + V  + L+NA
Sbjct: 127 LLQYRRNVGKIHEGFNNDDQHDAHEFFLTLIGAVDDVMKVVLENA 171


>Z82075-2|CAB60333.1|  328|Caenorhabditis elegans Hypothetical
           protein W07A8.5 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = -3

Query: 318 TFFPSAFIIVVT--GRYCNIFFKLNSTAYLFIAPQNQHVTE*NRYI 187
           T FP A++IV+T  G  C I F  + T YLF  P++ + TE  ++I
Sbjct: 41  TKFPVAYLIVMTICGIVCKIAFITDFTTYLFF-PEDIY-TEYRQFI 84


>DQ178242-1|ABA18181.1|  578|Caenorhabditis elegans Frizzled homolog
           protein.
          Length = 578

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -1

Query: 224 HKINTLLNKIGIYLILXSMYVHLLLC 147
           HKI  L++KIGI+ +L ++   L++C
Sbjct: 441 HKITQLMSKIGIFSLLYTIPSLLIIC 466


>AF016413-2|ABA54421.1|  578|Caenorhabditis elegans Caenorhabditis
           frizzled homologprotein 2, isoform a protein.
          Length = 578

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -1

Query: 224 HKINTLLNKIGIYLILXSMYVHLLLC 147
           HKI  L++KIGI+ +L ++   L++C
Sbjct: 441 HKITQLMSKIGIFSLLYTIPSLLIIC 466


>AF016413-1|ABA54422.1|  550|Caenorhabditis elegans Caenorhabditis
           frizzled homologprotein 2, isoform b protein.
          Length = 550

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -1

Query: 224 HKINTLLNKIGIYLILXSMYVHLLLC 147
           HKI  L++KIGI+ +L ++   L++C
Sbjct: 441 HKITQLMSKIGIFSLLYTIPSLLIIC 466


>AB026113-1|BAA84678.1|  550|Caenorhabditis elegans Cfz2 protein.
          Length = 550

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -1

Query: 224 HKINTLLNKIGIYLILXSMYVHLLLC 147
           HKI  L++KIGI+ +L ++   L++C
Sbjct: 441 HKITQLMSKIGIFSLLYTIPSLLIIC 466


>Z74043-11|CAA98549.3|  303|Caenorhabditis elegans Hypothetical
           protein T19B10.10 protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/65 (24%), Positives = 36/65 (55%)
 Frame = +2

Query: 110 LDNIDKS*TITYYIIIDVHTSXIILNIYLFYSVTC*FCGAMNKYAVLFNLKKILQYRPVT 289
           ++NI+    I+ Y  I ++ + +  N+++FY++   +  A+ K     +L KI   +P T
Sbjct: 233 VENIENQHIISIYAGIGLNLACVS-NVFVFYTINSEYRSAIRKLIGKVDLAKI---KPTT 288

Query: 290 TIINA 304
           +I+ +
Sbjct: 289 SIVKS 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,577,925
Number of Sequences: 27780
Number of extensions: 176719
Number of successful extensions: 417
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)